R: Exponential Random Partition Models

# Exponential Random Partition Models

## Documentation for package ‘ERPM’ version 0.2.0

- DESCRIPTION file.
- Package NEWS.

## Help Pages

Bell_constraints | Function to calculate the number of partitions with groups of sizes between smin and smax
calculate_denominator_Dirichlet_restricted | Calculate Dirichlet denominator
calculate_proba_Dirichlet_restricted | Calculate Dirichlet probability
check_sizes | Function to determine whether a partition contains the allowed group sizes
computeStatistics | Compute Statistics
computeStatistics_multiple | Compute Statistics multiple
compute_averagesize | Compute the average size of a random partition
compute_numgroups_denominator | Compute denominator for model with number of groups
correlation_between | Between groups correlation
correlation_within | Within groups correlation
correlation_with_size | Correlation with size
count_classes | Function to count the number of partitions with a certain group size structure, for all possible group size structure. Function to use after calling the "find_all_partitions" function.
CUP | CUP
draw_Metropolis_multiple | Draw Metropolis multiple
draw_Metropolis_single | Draw Metropolis single
estimate_ERPM | Estimate ERPM
estimate_logL | Estimate log likelihood
estimate_multipleERPM | Estimate ERPM for multiple observations
estimation | Exemplary outcome objects for the ERPM Package
exactestimates_numgroups | Exact estimates number of groups
find_all_partitions | Function to enumerate all possible partitions for a given n
gridsearch_burninthining_multiple | Grid - search burnin thining multiple
gridsearch_burninthining_single | Grid - search burnin thining single
gridsearch_burnin_single | Grid - search burnin single
gridsearch_thining_single | Grid - search thining single
group_size | Statistics on the size of groups in a partition
icc | Intra class correlation
number_categories | Number of individuals having an attribute
number_ties | Same pairs of individuals in a partition
order_groupids | Function to replace the ids of the group without forgetting an id and put in the first appearance order for example: [2 1 1 4 2] becomes [1 2 2 3 1]
outcomeObjects | Exemplary outcome objects for the ERPM Package
phase1 | Core function for Phase 1
plot_averagesizes | Plot average sizes
plot_numgroups_likelihood | Plot likelihood of number groups
plot_partition | Visualization of partition
print.results.bayesian.erpm | Print results of bayesian estimation (beta version)
print.results.list.erpm | Print estimation results
print.results.p3.erpm | Print results of estimation of phase 3
proportion_isolate | Proportion of isolates
range_attribute | Range of attribute in groups
run_phase1_multiple | Phase 1 wrapper for multiple observations
run_phase1_single | Phase 1 wrapper for single observation
run_phase2_multiple | Phase 2 wrapper for multiple observation
run_phase2_single | Phase 2 wrapper for single observation
run_phase3_multiple | Phase 3 wrapper for multiple observation
run_phase3_single | Phase 3 wrapper for single observation
same_pairs | Same pairs of individuals in a partition
similar_pairs | Similar pairs of individuals in a partition
simulate_burninthining_multiple | Simulate burnin thining multiple
simulate_burninthining_single | Simulate burnin thining single
simulate_burnin_single | Simulate burn in single
simulate_thining_single | Simulate thining single
Stirling2_constraints | Function to calculate the number of partitions with k groups of sizes between smin and smax