R: Dynamic Programming Algorithm for Peak Detection in ChIP-Seq Data

# Dynamic Programming Algorithm for Peak Detection in ChIP-Seq Data

## Documentation for package ‘PeakSegDP’ version 2024.1.24

- DESCRIPTION file.
- Package NEWS.

## Help Pages

calc.grad.list | calc grad list
calc.loss.from.lp.list | calc loss from lp list
calc.loss.list | calc loss list
cDPA | cDPA
chr11ChIPseq | ChIP-seq aligned read coverage for 4 samples on a subset of chr11
chr11first | Counts of first base of aligned reads
derivs | derivs
GeomTallRect | GeomTallRect
getPath | getPath
H3K36me3.AM.immune.19 | Several ChIP-seq profiles, some of which have few data points
H3K36me3.TDH.other.chunk3.cluster4 | 8 profiles of H3K36me3 data
H3K4me3.TDH.immune.chunk12.cluster4 | Histone ChIP-seq data, 26 samples, chr1 subset
PeakSegDP | PeakSegDP
phi.list | phi list
PoissonLoss | PoissonLoss
regression.funs | regression funs