GeomTallRect            GeomTallRect
H3K36me3.AM.immune.19   Several ChIP-seq profiles, some of which have
                        few data points
H3K36me3.TDH.other.chunk3.cluster4
                        8 profiles of H3K36me3 data
H3K4me3.TDH.immune.chunk12.cluster4
                        Histone ChIP-seq data, 26 samples, chr1 subset
PeakSegDP               PeakSegDP
PoissonLoss             PoissonLoss
cDPA                    cDPA
calc.grad.list          calc grad list
calc.loss.from.lp.list
                        calc loss from lp list
calc.loss.list          calc loss list
chr11ChIPseq            ChIP-seq aligned read coverage for 4 samples on
                        a subset of chr11
chr11first              Counts of first base of aligned reads
derivs                  derivs
getPath                 getPath
phi.list                phi list
regression.funs         regression funs
