RefManageR RHTML

# Add Citations to an R HTML Document and Print Bibliography

    library(RefManageR)
    bib <- ReadBib(system.file("Bib", "biblatexExamples.bib",
                               package = "RefManageR"), check = FALSE)
    bib2 <- ReadBib(system.file("Bib", "RJC.bib", package = "RefManageR"))[[seq_len(20)]]
    BibOptions(check.entries = FALSE, style = "html")

This is an R HTML document. This is an example of a citation in the text `Loh (1992)`. Now we cite in parentheses `(Baez and Lauda, 2004b, Ch. 2)`. You can change the default options in a setup chunk at the start of the document or at any other point using the `BibOptions` function or by specifying options as a list in the `.opts` argument to the cite functions. For demonstration purposes, we switch back and forth between citation styles here just to show the possibilities.

These are reports `Chiu and Chow[1]; Padhye, Firoiu, and Towsley[2]`. Their hyperlinks go to their entry in the bibliography. The link for `Markey (2005)` will take you to the document in a new window; this is the default, if a link is available (see `?open.BibEnty`). The following citation has no hyperlink `(de Geer, 1985)`.

I've added a reference to CTAN without citing it. Now I'm adding a reference from another bibliography (a second `BibEntry` object) `(Serban, Staicu, and Carroll, 2013)`. Look at all my Aristotle: `Aristotle[1]; Aristotle[2]; Aristotle[3]; Aristotle[4]`. Below is the `R` logo.

Some papers on the arXiv are `Baez and Lauda (2004a); Baez and Lauda (2004b); Itzhaki (1996); Wassenberg and Sanders (2010)`.

## References

aristotle:anima Aristotle. De Anima. Ed. by R. D. Hicks. Cambridge: Cambridge University Press, 1907.

aristotle:physics Aristotle. Physics. Trans. by P. H. Wicksteed and F. M. Cornford. New York: G. P. Putnam, 1929.

aristotle:poetics Aristotle. Poetics. Ed. by D. W. Lucas. Clarendon Aristotle. Oxford: Clarendon Press, 1968.

aristotle:rhetoric Aristotle. The Rhetoric of Aristotle with a commentary by the late Edward Meredith Cope. Ed. by E. M. Cope. With a comment. by E. M. Cope. Vol. 3. 3 vols. Cambridge University Press, 1877.

baez/article J. C. Baez and A. D. Lauda. “Higher-Dimensional Algebra V: 2-Groups”. Version 3. In: Theory and Applications of Categories 12 (2004), pp. 423-491. arXiv: math/0307200v3.

baez/online J. C. Baez and A. D. Lauda. Higher-Dimensional Algebra V: 2-Groups. Oct. 27, 2004. arXiv: math/0307200v3.

chiu W. W. Chiu and W. M. Chow. A Hybrid Hierarchical Model of a Multiple Virtual Storage (MVS) Operating System. Research rep. RC-6947. IBM, 1978.

ctan CTAN. The Comprehensive TeX Archive Network. 2006. URL: https://www.ctan.org (visited on 10/01/2006).

geer I. de Geer. “Earl, Saint, Bishop, Skald~– and Music. The Orkney Earldom of the Twelfth Century. A Musicological Study”. PhD thesis. Uppsala: Uppsala Universitet, 1985.

itzhaki N. Itzhaki. Some remarks on 't Hooft's S-matrix for black holes. Mar. 11, 1996. arXiv: hep-th/9603067.

loh N. C. Loh. “High-Resolution Micromachined Interferometric Accelerometer”. MA Thesis. Cambridge, Mass.: Massachusetts Institute of Technology, 1992.

markey N. Markey. Tame the BeaST. The B to X of BibTeX. Oct. 16, 2005. URL: http://tug.ctan.org/tex-archive/info/bibtex/tamethebeast/ttb_en.pdf (visited on 10/01/2006).

padhye J. Padhye, V. Firoiu, and D. Towsley. A Stochastic Model of TCP Reno Congestion Avoidance and Control. Tech. rep. 99-02. Amherst, Mass.: University of Massachusetts, 1999.

wassenberg J. Wassenberg and P. Sanders. Faster Radix Sort via Virtual Memory and Write-Combining. Aug. 17, 2010. arXiv: 1008.2849v1 [cs.DS].

## More References

[1] N. Serban, A. M. Staicu, and R. J. Carroll. “Multilevel Cross-Dependent Binary Longitudinal Data”. In: Biometrics 69.4 (2013), pp. 903–913.