R: Data Visualization Tools for Statistical Analysis Results

# Data Visualization Tools for Statistical Analysis Results

## Documentation for package ‘ggfortify’ version 0.4.17

- DESCRIPTION file.
- Package NEWS.

## Help Pages

A C D F G I L P R S U misc

ggfortify-package | ggfortify

## -- A --

apply_facets | Apply facets to to 'ggplot2::ggplot'
apply_grid | Apply grid to to 'ggplot2::ggplot'
as_tibble.basis | Convert a spline basis to a tibble
autoplot.aareg | Autoplot 'survival::aareg'
autoplot.acf | Autoplot 'stats::acf'. Note to pass 'plot = FALSE' to original function to suppress standard plot output
autoplot.ar | Autoplot time series models (like AR, ARIMA)
autoplot.basis | Autoplot spline basis instances
autoplot.breakpoints | Autoplot 'strucchange::breakpoints'
autoplot.breakpointsfull | Autoplot 'strucchange::breakpoints'
autoplot.cpt | Autoplot 'changepoint::cpt'
autoplot.cv.glmnet | Autoplot 'glmnet::cv.glmnet'
autoplot.decomposed.ts | Autoplot time-series-like
autoplot.density | Autoplot 'stats::density'
autoplot.factanal | Autoplot PCA-likes
autoplot.fGARCH | Autoplot time series models (like AR, ARIMA)
autoplot.forecast | Autoplot 'forecast::forecast'
autoplot.fracdiff | Autoplot time series models (like AR, ARIMA)
autoplot.ggmultiplot | Autoplot 'ggmultiplot' instances. It returns the passed instance as it is.
autoplot.ggplot | Autoplot 'ggplot' instances. It returns the passed instance as it is.
autoplot.glmnet | Autoplot 'glmnet::glmnet'
autoplot.HoltWinters | Autoplot time series models (like AR, ARIMA)
autoplot.irts | Autoplot time-series-like
autoplot.kmeans | Autoplot cluster instances
autoplot.list | Autoplot list
autoplot.lm | Autoplot 'stats::lm' and 'stats::glm'
autoplot.map | Autoplot 'maps::map'
autoplot.matrix | Plot 'base::matrix'
autoplot.MSM.lm | Autoplot 'MSwM::MSM.lm'
autoplot.nnetar | Autoplot time series models (like AR, ARIMA)
autoplot.pca_common | Autoplot PCA-likes
autoplot.performance | Autoplot 'ROCR::performance'
autoplot.prcomp | Autoplot PCA-likes
autoplot.princomp | Autoplot PCA-likes
autoplot.RasterCommon | Autoplot 'raster::raster'
autoplot.silhouette | Autoplot silhouette instances
autoplot.SpatialCommon | Autoplot 'maps::map'
autoplot.spec | Autoplot 'stats::spec'
autoplot.stepfun | Plot 'stats::stepfun'
autoplot.stl | Autoplot time-series-like
autoplot.survfit | Autoplot 'survival::survfit'
autoplot.survfit.cox | Autoplot 'survival::survfit'
autoplot.timeSeries | Autoplot time-series-like
autoplot.ts | Autoplot time-series-like
autoplot.tsmodel | Autoplot time series models (like AR, ARIMA)
autoplot.varprd | Autoplot 'vars::varprd'
autoplot.xts | Autoplot time-series-like

## -- C --

cbind_wraps | Wrapper for cbind
check_names | Check data names are equal with expected
confint.acf | Calculate confidence interval for 'stats::acf'

## -- D --

deprecate.warning | Show deprecate warning

## -- F --

fitted.ar | Calculate fitted values for 'stats::ar'
flatten | Flatten dataframe contains matrix
fortify.aareg | Convert 'survival::aareg' to 'data.frame'
fortify.acf | Convert 'stats::acf' to 'data.frame'
fortify.ar | Convert time series models (like AR, ARIMA) to 'data.frame'
fortify.Arima | Convert time series models (like AR, ARIMA) to 'data.frame'
fortify.basis | Convert spline basis instances to 'data.frame'
fortify.breakpoints | Convert 'changepoint::cpt' and 'strucchange::breakpoints' to 'data.frame'
fortify.breakpointsfull | Convert 'changepoint::cpt' and 'strucchange::breakpoints' to 'data.frame'
fortify.cpt | Convert 'changepoint::cpt' and 'strucchange::breakpoints' to 'data.frame'
fortify.cv.glmnet | Convert 'glmnet::cv.glmnet' to 'data.frame'
fortify.density | Convert 'stats::density' to 'data.frame'
fortify.dist | Convert 'stats::dist' to 'data.frame'
fortify.ets | Convert 'forecast::bats' and 'forecast::ets' to 'data.frame'
fortify.factanal | Convert 'stats::factanal' to 'data.frame'
fortify.fGARCH | Convert time series models (like AR, ARIMA) to 'data.frame'
fortify.forecast | Convert 'forecast::forecast' to 'data.frame'
fortify.fracdiff | Convert time series models (like AR, ARIMA) to 'data.frame'
fortify.glmnet | Convert 'glmnet::glmnet' to 'data.frame'
fortify.HoltWinters | Convert time series models (like AR, ARIMA) to 'data.frame'
fortify.kmeans | Convert cluster instances to 'data.frame'
fortify.lfda | Convert 'lfda::lfda' or 'lfda::klfda' or 'lfda::self' to 'data.frame'
fortify.list | Convert list to data.frame
fortify.matrix | Convert 'base::matrix' to 'data.frame'
fortify.MSM.lm | Convert 'MSwM::MSM.lm' to 'data.frame'
fortify.nnetar | Convert time series models (like AR, ARIMA) to 'data.frame'
fortify.performance | Convert 'ROCR::performance' objects to 'data.frame'
fortify.prcomp | Convert 'stats::prcomp', 'stats::princomp' to 'data.frame'
fortify.princomp | Convert 'stats::prcomp', 'stats::princomp' to 'data.frame'
fortify.RasterCommon | Convert 'raster' to 'data.frame'
fortify.silhouette | Convert 'cluster::silhouette' to 'data.frame'
fortify.SpatialCommon | Convert 'sp' instances to 'data.frame'.
fortify.spec | Convert 'stats::spec' to 'data.frame'
fortify.stepfun | Convert 'stats::stepfun' to 'data.frame'
fortify.survfit | Convert 'survival::survfit' to 'data.frame'
fortify.survfit.cox | Convert 'survival::survfit' to 'data.frame'
fortify.table | Convert 'base::table' to 'data.frame'
fortify.ts | Convert time-series-like to data.frame
fortify.tsmodel | Convert time series models (like AR, ARIMA) to 'data.frame'
fortify.varprd | Convert 'vars::varprd' to 'data.frame'
fortify_base | Convert 'base::table' to 'data.frame'
fortify_map | Convert 'maps::map' to 'data.frame'.

## -- G --

geom_confint | Connect observations by stairs.
geom_factory | Factory function to control 'ggplot2::geom_xxx' functions
get.dtindex | Convert 'ts' index to 'Date' 'vector'
get.dtindex.continuous | Get 'Date' 'vector' continue to 'ts' index
get.layout | Calcurate layout matrix for 'ggmultiplot'
get_geom_function | Factory function to control 'ggplot2::geom_xxx' functions
ggbiplot | Draw 'biplot' using 'ggplot2'.
ggcpgram | Plots a cumulative periodogram
ggdistribution | Plot distribution
ggfortify | ggfortify
ggfreqplot | Plot seasonal subseries of time series, generalization of 'stats::monthplot'
ggmultiplot-class | An S4 class to hold multiple 'ggplot2::ggplot' instances
ggtsdiag | Plots time-series diagnostics
grid.draw.ggmultiplot | The implemented grid.draw method for ggmultiplot, in order to work with ggsave() properly

## -- I --

infer | Infer class name
is.univariate | Check if Validates number of 'ts' variates
is_derived_from | Check object is target class, or object is 'data.frame' fortified from target.

## -- L --

length-method | An S4 class to hold multiple 'ggplot2::ggplot' instances

## -- P --

plot_confint | Attach confidence interval to 'ggplot2::ggplot'
plot_label | Attach label to 'ggplot2::ggplot'
post_autoplot | Post process for fortify. Based on 'ggplot2::qplot'
post_fortify | Post process for fortify.
print-method | Generic print function for 'ggmultiplot'

## -- R --

rbind_ts | Rbind original and predicted time-series-like instances as fortified 'data.frame'
residuals.ar | Calculate residuals for 'stats::ar'

## -- S --

show-method | Generic show function for 'ggmultiplot'
support_autoplot | Check if passed object is supported by 'ggplot2::autoplot'

## -- U --

unscale | Backtransform 'scale'-ed object

## -- misc --

+-method | Generic add operator for 'ggmultiplot'
[-method | An S4 class to hold multiple 'ggplot2::ggplot' instances
[<--method | An S4 class to hold multiple 'ggplot2::ggplot' instances
[[-method | An S4 class to hold multiple 'ggplot2::ggplot' instances
[[<--method | An S4 class to hold multiple 'ggplot2::ggplot' instances