NNclean                 Nearest neighbor based clutter/noise detection
abundtest               Parametric bootstrap test for clustering in
                        abundance matrices
allele2zeroone          Converts alleleobject into binary matrix
alleleconvert           Format conversion for codominant marker data
alleledist              Shared allele distance for diploid loci
alleleinit              Diploid loci matrix initialization
allelepaircomp          Internal: compares two pairs of alleles
autoconst               Spatial autocorrelation parameter estimation
build.charmatrix        Internal: create character matrix out of allele
                        list
build.ext.nblist        Internal: generates neighborhood list for
                        diploid loci
build.nblist            Generate spatial weights from prabclus
                        neighborhood list
cluspop.nb              Simulation of presence-absence matrices
                        (clustered)
communities             Construct communities from individuals
communitydist           Distances between communities
comp.test               Compare species clustering and species groups
con.comp                Connectivity components of an undirected graph
con.regmat              Connected regions per species
coord2dist              Geographical coordinates to distances
crmatrix                Region-wise cluster membership
dicedist                Dice distance matrix
distratio               Distance ratio test statistics for distance
                        based clustering
geco                    geco distance matrix
geo2neighbor            Neighborhood list from geographical distance
homogen.test            Classical distance-based test for homogeneity
                        against clustering
hprabclust              Clustering of species ranges from
                        presence-absence matrices (hierarchical
                        methods)
incmatrix               Nestedness matrix
jaccard                 Jaccard distance matrix
kulczynski              Kulczynski distance matrix
kykladspecreg           Snail presence-absence data from Aegean sea
lcomponent              Largest connectivity component
lociplots               Visualises clusters of markers vs. species
nastats                 Missing values statistics for matrix
nb                      Neighborhood list for Aegean islands
nbtest                  Test of neighborhood list
nn                      Mean distance to kth nearest neighbor
phipt                   Distances between communities, auxiliary
                        functions
piecewiselin            Piecewise linear transformation for distance
                        matrices
plotdistreg             Plots for within-groups and between-groups
                        distance regression
pop.sim                 p-value simulation for presence-absence
                        matrices clustering test
prab.sarestimate        Estimates SAR model from log-abundance matrix
                        of prab-object.
prabclus-package        prabclus package overview
prabclust               Clustering for biotic elements or for species
                        delimitation (mixture method)
prabinit                Presence-absence/abundance matrix
                        initialization
prabtest                Parametric bootstrap test for clustering in
                        presence-absence matrices
qkulczynski             Quantitative Kulczynski distance matrix
randpop.nb              Simulation of presence-absence matrices
                        (non-clustered)
regdist                 Regression between subsets of dissimilarity
                        matrices
regdistbetween          Testing equality of within-groups and
                        between-groups distances regression
regdistbetweenone       Testing equality of one within-group and
                        between-two groups distances regression
regdistdiff             Regression difference between within-group
                        dissimilarities
regdistdiffone          Regression difference within reference group
                        and between-group dissimilarities
regeqdist               Testing equality of two distance-regressions
regpop.sar              Simulation of abundance matrices
                        (non-clustered)
siskiyou                Herbs of the Siskiyou Mountains
specgroups              Average within-group distances for given groups
stressvals              Stress values for different dimensions of
                        Kruskal's MDS
tetragonula             Microsatellite genetic data of Tetragonula bees
toprab                  Convert abundance matrix into presence/absence
                        matrix
unbuild.charmatrix      Internal: create allele list out of character
                        matrix
veronica                Genetic AFLP data of Veronica plants
waterdist               Overwater distances between islands in the
                        Aegean sea
