#############################
## Bowtie2-Single_Read.yml ##
#############################

idx_basedir:
  class: Directory
  path: ./data

idx_basename: tair10.fasta

fq1:
  class: File
  path: _FASTQ_PATH1_
  
SampleName: _SampleName_

results_path:
  class: Directory
  path: ./results

thread: 4

mismatches: 0

k: 50 

ModulesToLoad: 
  module1: bowtie2/2.4.5
