###############################
##   gsnap-Paired_end.yml    ##
###############################
fq1:
  class: File
  path: _FASTQ_PATH1_
 
fq2:
  class: File
  path: _FASTQ_PATH2_
  
SampleName: _SampleName_

results_path:
  class: Directory
  path: ./results

thread: 4

ModulesToLoad: 

rscript_gsnap_mapping:
  class: File
  path: ./param/docopt.R/gsnap/gsnap.doc.R

molecule: "DNA"

max_mismatches: "3"

