#############################
##       bcftools.yml      ##
#############################

idx_basename: tair10.fasta

SampleName: _SampleName_

data_path:
  class: Directory
  path: ./data

results_path:
  class: Directory
  path: ./results   

bam:
  class: File
  path: _bwasam_

thread: 4

ModulesToLoad: 
  module1: samtools/1.14
  module2: bcftools/1.15

## when run with cwltool, add following: --relax-path-checks --leave-outputs
