############################
## tophat2-Paired_end.yml ##
############################

idx_basedir:
  class: Directory
  path: ./data

idx_basename: tair10.fasta

fq1:
  class: File
  path: _FASTQ_PATH1_
  
fq2:
  class: File
  path: _FASTQ_PATH2_
  
SampleName: _SampleName_

results_path:
  class: Directory
  path: ./results

thread: 4

ModulesToLoad: 
  module1: bowtie2/2.3.4.1
  module2: tophat/2.1.1
