####################
## star-index.yml ##
####################

idx_basedir:
  class: Directory
  path: ./data

runMode: genomeGenerate
outFileNamePrefix: data/
genomeFastaFiles: 
  class: File
  path: data/tair10.fasta
genomeSAindexNbases: 9
sjdbGTFfile: 
  class: File
  path: data/tair10.gtf # recommend convert gff to gtf using ./gffread -T tair10.gff -o tair10.gtf
sjdbGTFfeatureExon: exon
sjdbGTFtagExonParentTranscript: transcript_id
sjdbOverhang: 100

results_path:
  class: Directory
  path: ./data

thread: 1

ModulesToLoad:
  module1: star/2.7.10a

