################################
##    trimmomatic-se.yml      ##
################################

fq1:
  class: File
  path: _FASTQ_PATH1_
  
SampleName: _SampleName_

results_path:
  class: Directory
  path: ./results

ModulesToLoad: 
  module1: trimmomatic/0.39
minlen: "MINLEN:35"

thread: 4

leading: "LEADING:3"

trailing: "TRAILING:3"

slidingwindow: "SLIDINGWINDOW:4:5"

adapter: AGATCGGAAGAGC

phred: 33
