#############################
## Kallisto-Paired_end.yml ##
#############################

idx_basedir:
  class: Directory
  path: ./data

idx_basename: tair10.fasta

kallisto_idx: kallisto.fasta

fq1:
  class: File
  path: _FASTQ_PATH1_

fq2:
  class: File
  path: _FASTQ_PATH2_
  
SampleName: _SampleName_

results_path:
  class: Directory
  path: ./results

thread: 4

bootstrap_samples: 10

fragment_length: 200

std_dev: 20

ModulesToLoad: 
  module1: kallisto/0.46.1
