R: Tools for Analyzing Crossover Interference

# Tools for Analyzing Crossover Interference

## Documentation for package ‘xoi’ version 0.72

- DESCRIPTION file.
- Package NEWS.

## Help Pages

bssbsb | BSS/BSB backcross data
chiasma | Estimate chiasma distribution from crossover counts
coincidence | Estimate coincidence function
convertxoloc | Convert format of crossover locations data
countxo | Estimate number of crossovers
distance.given.two | Distance between crossovers given there are two
est.coi | Estimate the coincidence function
est.coi.um | Estimate the coincidence as a function of micron distance
est.recrate | Estimate recombination rate
find.breaks | Estimate crossover locations
first.given.two | Location of first crossover given there are two
firstden | Distance to a crossover
fitGamma | Fit Gamma model
fitStahl | Fit Stahl model
gammacoi | Coincidence function for the gamma model
intensity | Estimate intensity function
ioden | Distance between crossovers
joint.given.two | Crossover locations given there are two
kfunc | estimate Ripley's K function
location.given.one | Location of crossover given there is one
recrate2scanone | Convert recrate to scanone format
simStahl | Simulate crossover locations under the Stahl model
stahlcoi | Coincidence function for the Stahl model
stahlLoglik | Calculate log likelihood for Stahl model
xoiversion | Installed version of R/xoi
xoprob | Distribution of number of crossovers