Entry: CIdata
Aliases: CIdata
Keywords: data
Description: Confidence-Interval for the Mean of the Poisson Distribution
URL: ../../../library/surveillance/html/CIdata.html

Entry: aggregate.disProg
Aliases: aggregate.disProg
Keywords: hplot
Description: Aggregate the observed counts
URL: ../../../library/surveillance/html/aggregate.disProg.html

Entry: algo.bayes
Aliases: algo.bayes algo.bayesLatestTimepoint algo.bayes1 algo.bayes2 algo.bayes3
Keywords: classif
Description: The Bayes System
URL: ../../../library/surveillance/html/algo.bayes.html

Entry: algo.call
Aliases: algo.call
Keywords: classif
Description: Query Transmission to Specified Surveillance Systems
URL: ../../../library/surveillance/html/algo.call.html

Entry: algo.cdc
Aliases: algo.cdcLatestTimepoint algo.cdc
Keywords: classif
Description: The CDC Algorithm
URL: ../../../library/surveillance/html/algo.cdc.html

Entry: algo.compare
Aliases: algo.compare
Keywords: classif
Description: Comparison of Specified Surveillance Systems using Quality Values
URL: ../../../library/surveillance/html/algo.compare.html

Entry: algo.cusum
Aliases: algo.cusum
Keywords: classif
Description: CUSUM method
URL: ../../../library/surveillance/html/algo.cusum.html

Entry: algo.farrington
Aliases: algo.farrington
Keywords: classif
Description: Surveillance for a time series using the Farrington procedure.
URL: ../../../library/surveillance/html/algo.farrington.html

Entry: algo.farrington.assign.weights
Aliases: algo.farrington.assign.weights
Keywords: regression
Description: Assign weights to base counts
URL: ../../../library/surveillance/html/algo.farrington.assign.weights.html

Entry: algo.farrington.fitGLM
Aliases: algo.farrington.fitGLM
Keywords: regression
Description: Fit the Poisson GLM of the Farrington procedure for a single time point
URL: ../../../library/surveillance/html/algo.farrington.fitGLM.html

Entry: algo.farrington.threshold
Aliases: algo.farrington.threshold
Keywords: regression
Description: Threshold computations using a two sided confidence interval
URL: ../../../library/surveillance/html/algo.farrington.threshold.html

Entry: algo.glrnb
Aliases: algo.glrnb
Keywords: classif
Description: Cound data regression charts
URL: ../../../library/surveillance/html/algo.glrnb.html

Entry: algo.glrpois
Aliases: algo.glrpois
Keywords: classif
Description: Poisson regression charts
URL: ../../../library/surveillance/html/algo.glrpois.html

Entry: algo.hhh
Aliases: algo.hhh print.ah coef.ah
Keywords: ts regression
Description: Model fit based on the Held, Hoehle, Hofman paper
URL: ../../../library/surveillance/html/algo.hhh.html

Entry: algo.hhh.grid
Aliases: algo.hhh.grid print.ahg coef.ahg
Keywords: misc
Description: Function to try multiple starting values
URL: ../../../library/surveillance/html/algo.hhh.grid.html

Entry: algo.hmm
Aliases: algo.hmm
Keywords: classif
Description: Hidden Markov Model (HMM) method
URL: ../../../library/surveillance/html/algo.hmm.html

Entry: algo.quality
Aliases: algo.quality
Keywords: misc
Description: Computation of Quality Values for a Surveillance System Result
URL: ../../../library/surveillance/html/algo.quality.html

Entry: algo.rki
Aliases: algo.rkiLatestTimepoint algo.rki algo.rki1 algo.rki2 algo.rki3
Keywords: classif
Description: The system used at the RKI
URL: ../../../library/surveillance/html/algo.rki.html

Entry: algo.rogerson
Aliases: algo.rogerson
Keywords: classif
Description: Modified CUSUM method as proposed by Rogerson and Yamada (2004)
URL: ../../../library/surveillance/html/algo.rogerson.html

Entry: algo.summary
Aliases: algo.summary
Keywords: print
Description: Summary Table Generation for Several Disease Chains
URL: ../../../library/surveillance/html/algo.summary.html

Entry: algo.twins
Aliases: algo.twins
Keywords: ts regression
Description: Model fit based on a two-component epidemic model
URL: ../../../library/surveillance/html/algo.twins.html

Entry: anscombe.residuals
Aliases: anscombe.residuals
Keywords: regression
Description: Compute Anscombe residuals
URL: ../../../library/surveillance/html/anscombe.residuals.html

Entry: arlCusum
Aliases: arlCusum
Keywords: models
Description: Calculation of Average Run Length for discrete CUSUM schemes
URL: ../../../library/surveillance/html/arlCusum.html

Entry: bestCombination
Aliases: bestCombination
Keywords: hplot
Description: Partition of a number into two factors
URL: ../../../library/surveillance/html/bestCombination.html

Entry: compMatrix.writeTable
Aliases: compMatrix.writeTable
Keywords: print
Description: Latex Table Generation
URL: ../../../library/surveillance/html/compMatrix.writeTable.html

Entry: correct53to52
Aliases: correct53to52
Keywords: utilities
Description: Data Correction from 53 to 52 weeks
URL: ../../../library/surveillance/html/correct53to52.html

Entry: create.disProg
Aliases: create.disProg
Keywords: hplot
Description: Creating an object of class disProg
URL: ../../../library/surveillance/html/create.disProg.html

Entry: create.grid
Aliases: create.grid
Keywords: misc
Description: Computes a matrix of initial values
URL: ../../../library/surveillance/html/create.grid.html

Entry: disProg2sts
Aliases: disProg2sts sts2disProg
Keywords: utilities
Description: Convert disProg object to sts and vice versa
URL: ../../../library/surveillance/html/disProg2sts.html

Entry: enlargeData
Aliases: enlargeData
Keywords: utilities
Description: Data Enlargement
URL: ../../../library/surveillance/html/enlargeData.html

Entry: estimateGLRNbHook
Aliases: estimateGLRNbHook
Keywords: regression
Description: Hook function for in-control mean estimation
URL: ../../../library/surveillance/html/estimateGLRNbHook.html

Entry: estimateGLRPoisHook
Aliases: estimateGLRPoisHook
Keywords: regression
Description: Hook function for in-control mean estimation
URL: ../../../library/surveillance/html/estimateGLRPoisHook.html

Entry: find.kh
Aliases: find.kh
Keywords: models
Description: Determine the k and h values in a standard normal setting
URL: ../../../library/surveillance/html/find.kh.html

Entry: findH
Aliases: findH hValues
Keywords: models
Description: Find decision interval for given in-control ARL and reference value
URL: ../../../library/surveillance/html/findH.html

Entry: findK
Aliases: findK
Keywords: models
Description: Find reference value
URL: ../../../library/surveillance/html/findK.html

Entry: ha
Aliases: ha
Keywords: datasets
Description: Hepatitis A in Berlin
URL: ../../../library/surveillance/html/ha.html

Entry: hepatitisA
Aliases: hepatitisA
Keywords: datasets
Description: Hepatitis A in Germany
URL: ../../../library/surveillance/html/hepatitisA.html

Entry: influMen
Aliases: influMen
Keywords: datasets
Description: Influenza and meningococcal infections in Germany, 2001-2006
URL: ../../../library/surveillance/html/influMen.html

Entry: surveillance-internal
Aliases: anscombeNB hypgeom2F1special hypGeomSmall add.legend fix.dimnames hcl.colors insert.zeroes wait init.sts merge.list commonDenom logInterpolation getH getHK getTheta1 unpackParams gradient weightedSumNeighbours jacobian sinCos2amplitudeShift jacobianAmplitudeShift getLambda expAlpha.mm logLik.ah logLik.ahg make.nu make.pois pois.plot tms.plot summary,GridTopology-method summary,Spatial-method
Keywords: internal
Description: Internal surveillance Functions
URL: ../../../library/surveillance/html/internal.html

Entry: loglikelihood
Aliases: loglikelihood
Keywords: models
Description: Calculation of the loglikelihood needed in algo.hhh
URL: ../../../library/surveillance/html/loglikelihood.html

Entry: m1
Aliases: m1 h1_nrwrp k1 m2 m3 m4 m5 n1 n2 q1_nrwh q2 s1 s2 s3
Keywords: datasets
Description: RKI SurvStat Data
URL: ../../../library/surveillance/html/m1.html

Entry: magic.dim
Aliases: magic.dim
Keywords: hplot
Description: Returns a suitable k1 x k2 for plotting the disProgObj
URL: ../../../library/surveillance/html/magic.dim.html

Entry: make.design
Aliases: make.design
Keywords: misc
Description: Create the design matrices
URL: ../../../library/surveillance/html/make.design.html

Entry: makePlot
Aliases: makePlot
Keywords: misc
Description: Plot Generation
URL: ../../../library/surveillance/html/makePlot.html

Entry: meanResponse
Aliases: meanResponse
Keywords: models
Description: Calculate mean response needed in algo.hhh
URL: ../../../library/surveillance/html/meanResponse.html

Entry: measles.weser
Aliases: measles.weser
Keywords: datasets
Description: Measles epidemics in Lower Saxony in 2001-2002
URL: ../../../library/surveillance/html/measles.weser.html

Entry: meningo.age
Aliases: meningo.age
Keywords: datasets
Description: Meningococcal infections in France 1985-1995
URL: ../../../library/surveillance/html/meningo.age.html

Entry: plot.atwins
Aliases: plot.atwins
Keywords: ts regression
Description: Plot results of a twins model fit
URL: ../../../library/surveillance/html/plot.atwins.html

Entry: plot.disProg
Aliases: plot.disProg plot.disProg.one
Keywords: hplot
Description: Plot Generation of the Observed and the defined Outbreak States of a (multivariate) time series
URL: ../../../library/surveillance/html/plot.disProg.html

Entry: plot.survRes
Aliases: plot.survRes plot.survRes.one
Keywords: hplot
Description: Plot a survRes object
URL: ../../../library/surveillance/html/plot.survRes.html

Entry: predict.ah
Aliases: predict.ah predict.ahg
Keywords: models
Description: Predictions from a HHH model
URL: ../../../library/surveillance/html/predict.ah.html

Entry: primeFactors
Aliases: primeFactors
Keywords: hplot
Description: Prime number factorization
URL: ../../../library/surveillance/html/primeFactors.html

Entry: print.algoQV
Aliases: print.algoQV
Keywords: print
Description: Print quality value object
URL: ../../../library/surveillance/html/print.algoQV.html

Entry: readData
Aliases: readData
Keywords: misc
Description: Reading of Disease Data
URL: ../../../library/surveillance/html/readData.html

Entry: residuals.ah
Aliases: residuals.ah residuals.ahg
Keywords: models
Description: Residuals from a HHH model
URL: ../../../library/surveillance/html/residuals.ah.html

Entry: salmonella.agona
Aliases: salmonella.agona
Keywords: datasets
Description: Salmonella Agona cases in the UK 1990-1995
URL: ../../../library/surveillance/html/salmonella.agona.html

Entry: shadar
Aliases: shadar
Keywords: datasets
Description: Salmonella Hadar cases in Germany 2001-2006
URL: ../../../library/surveillance/html/shadar.html

Entry: sim.pointSource
Aliases: sim.pointSource
Keywords: datagen
Description: Generation of Simulated Point Source Epidemy
URL: ../../../library/surveillance/html/sim.pointSource.html

Entry: sim.seasonalNoise
Aliases: sim.seasonalNoise
Keywords: datagen
Description: Generation of Background Noise for Simulated Timeseries
URL: ../../../library/surveillance/html/sim.seasonalNoise.html

Entry: simHHH
Aliases: simHHH simHHH.default simHHH.ah
Keywords: datagen
Description: Simulates data based on the model proposed by Held et. al (2005)
URL: ../../../library/surveillance/html/simHHH.html

Entry: sts-class
Aliases: sts-class nrow,sts-method ncol,sts-method dim,sts-method colnames,sts,missing,missing-method initialize,sts-method as.data.frame,sts-method
Keywords: classes
Description: Class "sts" -- surveillance time series
URL: ../../../library/surveillance/html/sts-class.html

Entry: aggregate-methods
Aliases: aggregate,sts,ANY,ANY-method aggregate,sts-method
Keywords: methods
Description: Aggregate the the series of an sts object
URL: ../../../library/surveillance/html/stsAggregate.html

Entry: display-methods
Aliases: plot plot,sts,missing-method show,sts-method plot.sts.time plot.sts.time.one plot.sts.spacetime plot.sts.alarm
Keywords: ts
Description: Display Methods for Surveillance Time-Series Objects
URL: ../../../library/surveillance/html/stsDisp.html

Entry: obsinyear-methods
Aliases: obsinyear obsinyear-methods obsinyear,sts-method
Keywords: methods
Description: ~~ Methods for Function obsinyear ~~
URL: ../../../library/surveillance/html/stsObsInYear.html

Entry: [-methods
Aliases: [-methods [,sts-method
Keywords: methods array
Description: Methods for "[": Extraction or Subsetting in Package 'surveillance'
URL: ../../../library/surveillance/html/stsXtrct.html

Entry: year-methods
Aliases: year year-methods year,sts-method
Keywords: methods
Description: Methods for Function year
URL: ../../../library/surveillance/html/stsYear.html

Entry: sumNeighbours
Aliases: sumNeighbours
Keywords: hplot
Description: Calculates the sum of counts of adjacent areas
URL: ../../../library/surveillance/html/sumNeighbours.html

Entry: surveillance-package
Aliases: surveillance-package surveillance
Keywords: package
Description: Outbreak detection algorithms for surveillance data
URL: ../../../library/surveillance/html/surveillance-package.html

Entry: test
Aliases: test
Keywords: misc
Description: Print xtable for several diseases and the summary
URL: ../../../library/surveillance/html/test.html

Entry: testSim
Aliases: testSim
Keywords: misc
Description: Print xtable for a Simulated Disease and the Summary
URL: ../../../library/surveillance/html/testSim.html

Entry: toFileDisProg
Aliases: toFileDisProg
Keywords: file
Description: Writing of Disease Data
URL: ../../../library/surveillance/html/toFileDisProg.html

Entry: wrap.algo
Aliases: wrap.algo bayes cdc rki hmm cusum farrington glrpois glrnb rogerson
Keywords: classif
Description: Multivariate Surveillance through independent univariate algorithms
URL: ../../../library/surveillance/html/wrap.algo.html

Entry: xtable.algoQV
Aliases: xtable.algoQV
Keywords: print
Description: Xtable quality value object
URL: ../../../library/surveillance/html/xtable.algoQV.html
