peptides.h File Reference

#include <BALL/common.h>
#include <BALL/KERNEL/protein.h>
#include <BALL/DATATYPE/options.h>
#include <BALL/CONCEPT/embeddable.h>

Go to the source code of this file.

Classes
class	BALL::Peptides::NameConverter
	This class provides conversion of atom names between naming schemata. More...
struct	BALL::Peptides::NameConverter::Option
	Option names. More...
struct	BALL::Peptides::NameConverter::Default
	Default values for options. More...

Namespaces
	BALL
	BALL::Peptides

Typedefs
Type definitions
typedef std::list< String >	BALL::Peptides::ThreeLetterAASequence
	An amino acid sequence in three-letter code. More...
typedef String	BALL::Peptides::OneLetterAASequence
	An amino acid sequence in one-letter code. More...
Type definitions
typedef std::list< String >	BALL::Peptides::ThreeLetterAASequence
	An amino acid sequence in three-letter code. More...
typedef String	BALL::Peptides::OneLetterAASequence
	An amino acid sequence in one-letter code. More...

Functions
Amino acid sequence conversion
BALL_EXPORT char	BALL::Peptides::OneLetterCode (const String &aa)
BALL_EXPORT String	BALL::Peptides::ThreeLetterCode (char aa)
BALL_EXPORT bool	BALL::Peptides::IsOneLetterCode (char aa)
BALL_EXPORT bool	BALL::Peptides::IsThreeLetterCode (const String &aa)
BALL_EXPORT OneLetterAASequence	BALL::Peptides::ThreeLetterToOneLetter (const ThreeLetterAASequence &sequence)
BALL_EXPORT ThreeLetterAASequence	BALL::Peptides::OneLetterToThreeLetter (const OneLetterAASequence &sequence)
BALL_EXPORT OneLetterAASequence	BALL::Peptides::GetSequence (const Protein &protein)
BALL_EXPORT OneLetterAASequence	BALL::Peptides::GetSequence (const Chain &chain)
BALL_EXPORT OneLetterAASequence	BALL::Peptides::GetSequence (ResidueConstIterator it)
Amino acid sequence conversion
BALL_EXPORT char	BALL::Peptides::OneLetterCode (const String &aa)
BALL_EXPORT String	BALL::Peptides::ThreeLetterCode (char aa)
BALL_EXPORT bool	BALL::Peptides::IsOneLetterCode (char aa)
BALL_EXPORT bool	BALL::Peptides::IsThreeLetterCode (const String &aa)
BALL_EXPORT OneLetterAASequence	BALL::Peptides::ThreeLetterToOneLetter (const ThreeLetterAASequence &sequence)
BALL_EXPORT ThreeLetterAASequence	BALL::Peptides::OneLetterToThreeLetter (const OneLetterAASequence &sequence)
BALL_EXPORT OneLetterAASequence	BALL::Peptides::GetSequence (const Protein &protein)
BALL_EXPORT OneLetterAASequence	BALL::Peptides::GetSequence (const Chain &chain)
BALL_EXPORT OneLetterAASequence	BALL::Peptides::GetSequence (ResidueConstIterator it)