org.forester.phylogeny.data

Class Distribution

java.lang.Object

org.forester.phylogeny.data.Distribution

All Implemented Interfaces:

PhylogenyData

public class Distribution
extends java.lang.Object
implements PhylogenyData

Constructor Summary

Constructors

Constructor and Description
Distribution(java.lang.String desc)
Distribution(java.lang.String desc, java.math.BigDecimal latitude, java.math.BigDecimal longitude, java.math.BigDecimal altitude, java.lang.String geodetic_datum)

Method Summary

Methods

Modifier and Type	Method and Description
java.lang.StringBuffer	asSimpleText()
java.lang.StringBuffer	asText()
PhylogenyData	copy() Creates a new PhylogenyData object with identical values as this PhylogenyData.
java.math.BigDecimal	getAltitude()
java.lang.String	getDesc()
java.lang.String	getGeodeticDatum()
java.math.BigDecimal	getLatitude()
java.math.BigDecimal	getLongitude()
boolean	isEqual(PhylogenyData data) Compares this PhylogenyData to PhylogenyData data.
void	setAltitude(java.math.BigDecimal altitude)
void	setDescription(java.lang.String desc)
void	setGeodeticDatum(java.lang.String datum)
void	setLatitude(java.math.BigDecimal latitude)
void	setLongitude(java.math.BigDecimal longitud)
java.lang.StringBuffer	toNHX()
void	toPhyloXML(java.io.Writer writer, int level, java.lang.String indentation) Writes a phyloXML representation of this phylogeny data.
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Distribution

public Distribution(java.lang.String desc)

Distribution

public Distribution(java.lang.String desc,
            java.math.BigDecimal latitude,
            java.math.BigDecimal longitude,
            java.math.BigDecimal altitude,
            java.lang.String geodetic_datum)

Method Detail

asSimpleText

public java.lang.StringBuffer asSimpleText()

Specified by:

asSimpleText in interface PhylogenyData

asText

public java.lang.StringBuffer asText()

Specified by:

asText in interface PhylogenyData

copy

public PhylogenyData copy()

Description copied from interface: PhylogenyData

Creates a new PhylogenyData object with identical values as this PhylogenyData. This ~should~ return a deep copy, but not there yet.

Specified by:

copy in interface PhylogenyData

Returns:

a ~deep~ copy of this PhylogenyData

getAltitude

public java.math.BigDecimal getAltitude()

getDesc

public java.lang.String getDesc()

getGeodeticDatum

public java.lang.String getGeodeticDatum()

getLatitude

public java.math.BigDecimal getLatitude()

getLongitude

public java.math.BigDecimal getLongitude()

isEqual

public boolean isEqual(PhylogenyData data)

Description copied from interface: PhylogenyData

Compares this PhylogenyData to PhylogenyData data. In general, this should return true if and only if all fiels are exactly identical.

Specified by:

isEqual in interface PhylogenyData

Returns:

in general, true if and only if all fiels are exactly identical, false otherwise

setAltitude

public void setAltitude(java.math.BigDecimal altitude)

setDescription

public void setDescription(java.lang.String desc)

setGeodeticDatum

public void setGeodeticDatum(java.lang.String datum)

setLatitude

public void setLatitude(java.math.BigDecimal latitude)

setLongitude

public void setLongitude(java.math.BigDecimal longitud)

toNHX

public java.lang.StringBuffer toNHX()

Specified by:

toNHX in interface PhylogenyData

toPhyloXML

public void toPhyloXML(java.io.Writer writer,
              int level,
              java.lang.String indentation)
                throws java.io.IOException

Description copied from interface: PhylogenyData

Writes a phyloXML representation of this phylogeny data.

Specified by:

toPhyloXML in interface PhylogenyData

Throws:

java.io.IOException

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object