/*
 *                    BioJava development code
 *
 * This code may be freely distributed and modified under the
 * terms of the GNU Lesser General Public Licence.  This should
 * be distributed with the code.  If you do not have a copy,
 * see:
 *
 *      http://www.gnu.org/copyleft/lesser.html
 *
 * Copyright for this code is held jointly by the individual
 * authors.  These should be listed in @author doc comments.
 *
 * For more information on the BioJava project and its aims,
 * or to join the biojava-l mailing list, visit the home page
 * at:
 *
 *      http://www.biojava.org/
 *
 * Created on 01-21-2010
 */
package org.biojava.nbio.core.sequence.template;


/**
 * The details of a Compound
 * @author Andy Yates
 */
public abstract class AbstractCompound implements Compound {

	private final String base;
	private final String upperedBase;
	private String shortName = null;
	private String longName = null;
	private String description = null;
	private Float molecularWeight = null;


	// Added an empty constructor for Serialization
	public AbstractCompound(){
		this.base = null;
		this.upperedBase = null;
	}

	public AbstractCompound(String base) {
		this.base = base;
		this.upperedBase = base.toUpperCase();
	}

	public String getBase() {
		return base;
	}

	public String getUpperedBase() {
		return upperedBase;
	}

	@Override
public String getDescription() {
		return description;
	}

	@Override
public void setDescription(String description) {
		this.description = description;
	}

	@Override
public String getShortName() {
		return shortName;
	}

	@Override
public void setShortName(String shortName) {
		this.shortName = shortName;
	}

	@Override
public String getLongName() {
		return longName;
	}

	@Override
public void setLongName(String longName) {
		this.longName = longName;
	}

	@Override
public Float getMolecularWeight() {
		return molecularWeight;
	}

	@Override
public void setMolecularWeight(Float molecularWeight) {
		this.molecularWeight = molecularWeight;
	}

	@Override
	public String toString() {
		return base;
	}

	@Override
	public boolean equals(Object obj) {
		if (obj == null) {
			return false;
		}
		if (!(obj instanceof AbstractCompound)) {
			return false;
		}
		AbstractCompound them = (AbstractCompound) obj;
		return this.base.equals(them.base);
	}

	@Override
	public int hashCode() {
		return this.base.hashCode();
	}

	@Override
	public boolean equalsIgnoreCase(Compound compound) {
		if (compound == null) {
			return false;
		}
		if (!(compound instanceof AbstractCompound)) {
			return false;
		}
		AbstractCompound them = (AbstractCompound) compound;
		return this.base.toString().equalsIgnoreCase(them.base.toString());
	}
}
