/*
 *                    BioJava development code
 *
 * This code may be freely distributed and modified under the
 * terms of the GNU Lesser General Public Licence.  This should
 * be distributed with the code.  If you do not have a copy,
 * see:
 *
 *      http://www.gnu.org/copyleft/lesser.html
 *
 * Copyright for this code is held jointly by the individual
 * authors.  These should be listed in @author doc comments.
 *
 * For more information on the BioJava project and its aims,
 * or to join the biojava-l mailing list, visit the home page
 * at:
 *
 *      http://www.biojava.org/
 *
 * Created on 01-21-2010
 */

package org.biojava.nbio.core.sequence.features;

import org.biojava.nbio.core.sequence.loader.UniprotProxySequenceReader;

import java.util.LinkedHashMap;

/**
 * If you have a uniprot ID then it is possible to get a collection
 * of other id(s) that the protein is known by. This is a place holder
 * for the alternative source database and the id for the same protein.
 * Currently implement when the {@link UniprotProxySequenceReader} is used
 * to load a protein sequence
 *
 * @author Scooter Willis <willishf at gmail dot com>
 * @author Paolo Pavan
 */
public class DBReferenceInfo extends Qualifier {
	private LinkedHashMap<String, String> properties = new LinkedHashMap<String, String>();
	private String database = "";
	private String id = "";

	/**
	 * The source database and id
	 * @param database
	 * @param id
	 */
	public DBReferenceInfo(String database, String id){
		super("dbxref","");
		this.database = database;
		this.id = id;
	}

	/**
	 * Add a property and type to associate with this DBReferenceInfo
	 * @param type
	 * @param value
	 */

	public void addProperty(String type, String value){
		properties.put(type, value);
	}

	/**
	 * Get the properties
	 * @return the properties
	 */
	public LinkedHashMap<String, String> getProperties() {
		return properties;
	}

	/**
	 * @param properties the properties to set
	 */
	public void setProperties(LinkedHashMap<String, String> properties) {
		this.properties = properties;
	}

	/**
	 * @return the database
	 */
	public String getDatabase() {
		return database;
	}

	/**
	 * @param database the database to set
	 */
	public void setDatabase(String database) {
		this.database = database;
	}

	/**
	 * @return the id
	 */
	public String getId() {
		return id;
	}

	/**
	 * @param id the id to set
	 */
	public void setId(String id) {
		this.id = id;
	}

	@Override
	public String toString() {
		return database + ":" + id + ":" + properties;
	}



}
