ID align-wordmatch-sam
AP wordmatch
CL -wordsize 7 -stdout -auto -aformat sam -sformat2 fastq-sanger
CL ../../data/illumina_adapter_primer.fa -nodumpfeat 
CL ../../data/test1_illumina.fastq
FI stderr
FI wordmatch.log
FP /Average match length: 7.38/
FC = 32
FI stdout
FP /^FC12044_91407_8_200_10_437.*CTGCTTG	SXSXXXX	AS:i:7	NM:i:0/
FI Illumina_Genomici_DNA_Adapters1_1.gff
FC = 0
FI FC12044_91407_8_200_406_24.gff
FC = 0
//
