#NEXUS
BEGIN TAXA;
    TITLE Untitled_TAXA_Block_1;
    DIMENSIONS NTax = 9;
    TAXLABELS FR MS2 GA SP NL95 M11 MX1 QB PP7;
END;
BEGIN CHARACTERS;
    TITLE Untitled_DATA_Block_1;
    LINK TAXA = Untitled_TAXA_Block_1;
    DIMENSIONS NChar=720;
    FORMAT Datatype=RNA  Gap=-;
Matrix
FR       GGCAACGGU---GUGUUUACUGUUCCGAAGAACAAUAAAAUAGAUCGGGCUGCUUGCAAAGAGCCUGAUAUGAAUAUGUACUUACAGAAAGGGGUCGGCGGUUUCAUCCGUCGCCGCCUUAAGACUGUGGGUAUAGACUUGAACGAUCAAACGAUCAAUCAACGCCUGGCUCAACAAGGUAGCCGUGAUGGGUCUUUGGCGACGAUAGACUUAUCGUCUGCUUCUGACUCCAUCAGCGACCGCCUAGUGUGGAGUUUUCUCCCACCUGAGCUAUAUUCAUAUCUCGACAUGAUUCGAAGCCACUACGGUUACGUA---AAUGGCAAGAUGAUUCGUUGGGAACUAUUUUCGACGAUGGGUAAUGGGUUCACCUUUGAACUAGAGUCCAUGAUUUUCUGGGCUAUAGUCAGGGCUACUCAGAUCCAUUUUCGU---AACACCGGAACCAUUGGCAUCUAUGGGGACGAUAUUAUAUGCCCCACAGAGAUUGCACCUCGCGUGCUGGAAGCACUGAGCUUCUACGGUUUCAAACCGAAUCUACGAAAGACG---UUCACGUCCGGCUCUUUUCGCGAGAGCUGCGGCGCGCACUAUUUCCGUGGUGUCGAUGUUAAACCAUUUUAUAUCAAGAAACCAAUCACUGACCUAUUCUCCCUAAUGCUUAUACUUAACCGUAUACGCGGAUGGGGGGUAGUCAACGGAAUAGCAGACCCACGCCUC
MS2      GGGAACGGA---GUGUUUACAGUUCCGAAGAAUAAUAAAAUAGAUCGGGCUGCCUGUAAGGAGCCUGAUAUGAAUAUGUACCUCCAGAAAGGGGUCGGUGCUUUCAUCAGACGCCGGCUCAAAUCCGUUGGUAUAGACCUGAAUGAUCAAUCGAUCAACCAGCGUCUGGCUCAGCAGGGCAGCGUAGAUGGUUCGCUUGCGACGAUAGACUUAUCGUCUGCAUCCGAUUCCAUCUCCGAUCGCCUGGUGUGGAGUUUUCUCCCACCUGAGCUAUAUUCAUAUCUCGAUCGUAUCCGCUCACACUACGGA---GUA---GAUGGCGAGACGAUACGAUGGGAACUAUUUUCCACAAUGGGAAAUGGGUUCACAUUUGAGCUAGAGUCCAUGAUAUUCUGGGCAAUAGUCAAAGCGACCCAAAUCCAUUUUGGU---AACGCCGGAACCAUAGGCAUCUACGGGGACGAUAUUAUAUGUCCCAGUGAGAUUGCACCCCGUGUGCUAGAGGCACUUGCCUACUACGGUUUUAAACCGAAUCUUCGUAAAACG---UUCGUGUCCGGGCUCUUUCGCGAGAGCUGCGGCGCGCACUUUUACCGUGGUGUCGAUGUCAAACCGUUUUACAUCAAGAAACCUGUUGACAAUCUCUUCGCCCUGAUGCUGAUAUUAAAUCGGCUACGGGGUUGGGGAGUUGUCGGAGGUAUGUCAGAUCCACGCCUC
GA       GGCAACGGU---UUGUUUUCUGUUCCGAAGAACAAUAAAAUAGAUCGGGCUGCCUGUAAGGAGCCUGAUAUGAAUAUGUACCUUCAGAAGGGGGCGGGAUCUUUUAUAAGAAAACGCCUUCGCUCCGUCGGUAUAGAUCUUAACGAUCAGACGCGCAAUCAGGAAUUAGCCCGACUUGGCAGCAUUGAUGGUUCGCUCGCUACUAUUGAUCUUAGUAGCGCUAGCGAUUCCAUCUCUGACCGUCUUGUCUGGGAUCUACUUCCGCCGCACGUUUAUUCAUACCUCGCUCGUAUCCGAACAUCGUUCACUAUGAUC---GAUGGGCGUUUACAUAAGUGGGGUCUAUUUUCUACCAUGGGUAAUGGCUUCACGUUCGAACUCGAGUCCAUGAUCUUUUGGGCUUUAAGCAAGAGCAUUAUGCUGUCCAUGGGUGUU---ACUGGCUCAUUAGGCAUCUACGGUGAUGAUAUAAUCGUCCCCGUUGAGUGUCGUCCAACUCUCCUUAAGGUACUAUCCGCUGUAAACUUUCUUCCUAAUGAGGAGAAAACA---UUUACAACGGGUUACUUUCGUGAAAGUUGUGGUGCCCACUUCUUCAAAGAUGCCGACAUGAAACCUUUUUACUGCAAGCGGCCAAUGGAAACCCUUCCCGAUGUCAUGUUGCUAUGCAACAGGAUAAGAGGUUGGCAGACCGUUGGUGGAAUGUCAGAUCCGCGACUC
SP       UCA---AAUAAAGCAGUCACUGUUCCAAAGAACAGUAAAACUGAUCGCUGUAUUGCUAUCGAGCCCGGCUGGAAUAUGUUUUUCCAGUUAGGCGUCGGUGCAGUGCUACGCGAUAGGUUGCGUUUAUGGAAGAUUGAUCUUAAUGACCAAUCGACCAAUCAACGCCUCGCGCGUGAUGGGUCUCUGCUAAAUCAUUUAGCUACCAUAGACUUAUCUGCAGCCAGCGAUUCAAUCAGCCUUAAGCUUGUUGAGUUGCUCAUGCCCCCUGAAUGGUAUGACCUUCUAACGGAUCUCCGAUCCGAUGAAGGAAUACUGCCUGACGGGCGAGUUGUGACCUAUGAGAAAAUAUCCUCCAUGGGUAAUGGCUACACUUUCGAACUCGAGUCGCUUAUUUUUGCGGCUAUCGCUCGAAGUGUGUGCGAGUUACUGGAAAUUGACCAAUCUACUGUUAGCGUGUACGGGGAUGAUAUAAUCAUCGAUACCCGUGCCGCAGCUCCAUUAAUGGAUGUCUUUGAGUACGUCGGGUUCACUCCUAACAGAAAGAAAACG---UUCUGCGAUGGACCCUUCCGCGAAUCGUGCGGUAAGCACUGGUUCCAAGGGGUAGAUGUAACGCCCUUUUACAUACGACGACCAAUACGUUGCCUAGCCGAUAUGAUACUUGUAUUAAAUAGUAUCUAUAGGUGGGGCACUGUUGAUGGCAUAUGGGAUCCUAGAGCA
NL95     UCG---AAUAAAGCAGUCACUGUUCCAAAGAACAGUAAAACUGAUCGCUGCAUUGCUAUCGAGCCCGGCUGGAAUAUGUUUUUCCAGUUAGGCGUCGGUGCUGUGCUCCGUGAUCGGUUGCGCCUUUGGCAUAUUGAUCUCAAUGAUCAAUCUGUUAAUCAGCGCCUCGCACGUGAUGCAUCGCAGUUGGACCAUUUGGCCACUGUCGAUUUAUCAGCAGCAAGCGAUUCGAUAAGCUUACGGCUUGUUGAACUGCUAAUGCCGCCUGCUUGGUUUGAUCUCCUGACCGAUCUCCGAUCGGACCAGGGAAUCCUGCCUGACGGGCGUGUCGUUACUUACGAGAAAAUAUCCUCCAUGGGUAAUGGCUACACUUUUGAGCUAGAGUCGUUAAUUUUCGCGGCUCUCGCCAGAAGUGUGUGCGAGUUAUUGGACCUUGACCAGUCAACUGUCAGCGUGUACGGUGAUGAUAUAAUCAUCGAUUCACGUGCCGCUGAUGUCCUUAUGGCGGUUUUCGAGUAUGUUGGGUUUACGCCUAAUCGAAAGAAAACU---UUCAUUAAGGGCCCCUUUAGAGAGUCGUGCGGAAAGCACUGGCACUCCGGGGUUGACGUAACGCCCUUUUACAUACGCCGCCCAAUCCGCUGCCUAGCCGACAUGAUACUUGUAUUGAACAGUAUCUACCGGUGGGGUACGAUUGACGGUGUGUGGGAUCCUAGGGUA
M11      CCUUUCAAUAAAGCAGUUACUGUACCAAAGAACAGUAAAACUGAUCGCUGUAUAGCCAUCGAACCUGGCUGGAAUAUGUUUUUCCAGCUAGGUAUCGGUGGUGUUAUACGCGAAAAGUUGCGUUUGUGGGGCAUCGAUCUGAAUGAUCAGACGAUUAACCAAACGCGCGCAUAUUUAGGCAGCCGUGAUGAUAAUCUCGCCACGGUGGAUCUCUCAAGAGCUAGCGAUACUAUUUCGCUUGCCCUUGUUGAGCUCCUUAUGCCUCCUGAGUGGUUUAAGGUCCUGUUGGCCUUAAGAUCACCCAAGGGCAUCUUGCCAGAUGGUACCGUCAUUACUUAUGAGAAAAUAUCCUCAAUGGGUAAUGGCUAUACCUUCGAGCUUGAGUCGCUUAUAUUUGCGGCUCUUGCUCGGUCUUUAUGCGAAUUACUGGGCUUACGACCGUCAGAUGUUACGGUCUAUGGCGAUGACAUAAUAUUGCCAUCAGACGCGUGCAGUCCUCUAGUUGAAGUUUUCUCCUAUGUUGGUUUUCGUACCAACAAGAAGAAAACG---UUUUCUAGUGGACCGUUCCGAGAGUCGUGCGGAAAGCACUACUUUUUGGGCGUUGACGUCACACCUUUCUACAUACGUCGCCGUAUAGUGAGUCCCUCCGAUCUCAUACUGGUUUUGAACCAGAUGUAUCGUUGGGCCACAAUUGACGGCGUAUGGGAUCCUAGGGUA
MX1      CCUUUCAAUAAAGCAGUUACUGUACCAAAGAACAGUAAAACUGAUCGCUGCAUCGCUAUCGAGCCAGGCUGGAAUAUGUUUUUCCAGUUGGGCAUUGGUGGCGUAAUUCGCGAAAAGUUGCACUUGUGGAAUAUCGACCUGAAUGAUCAGACGAUUAACCAGGUGCGCGCAUAUUCAGGCAGCUGUAGCAAUGAACUUGCUACAGUGGAUCUCUCGAGCGCGAGUGAUACUAUUUCGCUUGCGCUCGUUGAGCUCCUGCUACCCCCUGCGUGGUUUAAAGUCCUUACGGACCUUAGGUCACGAAGGGGUAUGUUGCCAGACGGUAGAAUCAUUACCUAUGAGAAAAUUUCCUCAAUGGGUAACGGUUUCACCUUCGAGCUCGAGUCGCUUAUAUUUGCAGCUCUUGCUCGGUCUUUAUGCGAGUUACUGAACUUACAACCGUCGAGUGUCACGGUCUAUGGCGAUGAUAUUAUAUUGCCAUCAGACGCGUGCAGCUCGUUGAUUGAAGUUUUCUCCUACGUAGGUUUUAGAACCAACGAGAAGAAGACC---UUUUUCGACGGGCCGUUCCGAGAGUCGUGCGGAAAGCACUACUUUAUGGGCGUUGACGUCACACCUUUCUACAUACGCCACCGUAUAGUGAGUCCCUCUGAUCUCAUACUGGUUUUGAACCAGAUGUAUCGUUGGGCCACGAUUGAUGGCGUAUGGGAUCCUAGGGUA
QB       CCUUUUAAUAAAGCAGUUACUGUACCUAAGAACAGUAAGACAGAUCGUUGUAUUGCUAUCGAACCUGGUUGGAAUAUGUUUUUCCAACUGGGUAUCGGUGGCAUUCUACGCGAUCGGUUGCGUUGCUGGGGUAUCGAUCUGAAUGAUCAGACGAUAAAUCAGCGCCGCGCUCACGAAGGCUCCGUUACUAAUAACUUAGCAACGGUUGAUCUCUCAGCGGCAAGCGAUUCUAUAUCUCUUGCCCUCUGUGAGCUCUUAUUGCCCCUAGGCUGGUUUGAGGUUCUUAUGGACCUCAGAUCACCUAAGGGGCGAUUGCCUGACGGUAGUGUUGUUACCUACGAGAAGAUUUCUUCUAUGGGUAACGGUUACACAUUCGAGCUCGAGUCGCUUAUUUUUGCUUCUCUCGCUCGUUCCGUUUGUGAGAUACUGGACUUAGACUCGUCUGAGGUCACUGUUUACGGAGACGAUAUUAUUUUACCGUCCUGUGCAGUCCCUGCCCUCCGGGAAGUUUUUAAGUAUGUUGGUUUUACGACCAAUACUAAAAAGACU---UUUUCCGAGGGGCCGUUCAGAGAGUCGUGCGGCAAGCACUACUAUUCUGGCGUAGAUGUUACUCCCUUUUACAUACGUCACCGUAUAGUGAGUCCUGCCGAUUUAAUACUGGUUUUGAAUAACCUAUAUCGGUGGGCCACAAUUGACGGCGUAUGGGAUCCUAGGGCC
PP7      GACAGC---CGGUUCGAUUUUGUCGCUAAGACCGCGAAGGCGGUUCGCUUCAUCGCUAUGGAGCCAGAACUUAACAUGCUGCUGCAGAAAUCUGUAGGAGACACGAUAAGGGCUGCUCUGCGGAAAGCGGGUAUCGAUCUCAAUACCCAGCGACUAAAUCAAGAUCUUGCGUACCACGGAUCCGUUUUUCGGAAUCUCGGUACGAUAGAUCUGUCUAGCGCUUCCGAUACGUUAAGCAUUGAACUCGUGCGGCAGUACCUGCCGAAGCGGUUUCUCCGCUAUGUAUUGGAUCUCCGAACCCCCUACACGAGUGUA---GGUGGUAAGAAGCACAGGCUCGAGAAGGUCGCUUCGAUGGGCAACGGGUUCAUUUUUGAACUCCAGAGCCUCAUCUACGCAGCCUUCGCGCAUGCCAUGACGCUAGUAGUAGGAGGAAGAGAAUGCGACAUAGCCAUUUACGGCGAUGAUAUCAUCGUCAGUGAAUGCGUAGUAGAGCCUCUGAUGCAGUUCCUCGAAUGGCAUGGGUUCUGCCCCAAUCUCGAUAAGAGUUAUUGGGGAGGGGAUCCAUUCCGCGAGUCCUGCGGGAAGCACUACUUCGCUGGUCGCGACGUUACCCCUGUCUACGUGAAGGGGGCCCUGGAUAACCUACCUGCCCUUUUCCGUCUCUUCAACUCGUUGAAGCGAUGGGAGGAGCAAACAGGUAUCCGGAUCCCUGACACG
;
END;
BEGIN MRBAYES;
    set autoclose = yes nowarn = yes;
    charset first_pos = 1 - 720 \ 3;
    charset second_pos = 2 - 720 \ 3;
    charset third_pos = 3 - 720 \ 3;
    partition by_codon = 3 : first_pos , second_pos , third_pos;
    set partition = by_codon;
    lset nst = 6 rates = gamma;
    unlink shape = ( 3 );
END;
