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Upstream-Name: libpwiz
Source: http://proteowizard.sourceforge.net/downloads.shtml


License: Apache-2.0
 Apache License Version 2.0
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License: BSL-1.0
 Boost Software License - Version 1.0
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License: BSD-2-clause
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Files: libraries/boost_aux/boost/nowide/args.hpp
 libraries/boost_aux/boost/nowide/cenv.hpp
 libraries/boost_aux/boost/nowide/config.hpp
 libraries/boost_aux/boost/nowide/convert.hpp
 libraries/boost_aux/boost/nowide/cstdio.hpp
 libraries/boost_aux/boost/nowide/cstdlib.hpp
 libraries/boost_aux/boost/nowide/filebuf.hpp
 libraries/boost_aux/boost/nowide/fstream.hpp
 libraries/boost_aux/boost/nowide/iostream.hpp
 libraries/boost_aux/boost/nowide/stackstring.hpp
 libraries/boost_aux/boost/nowide/system.hpp
 libraries/boost_aux/boost/nowide/windows.hpp
 libraries/boost_aux/libs/nowide/src/iostream.cpp
Copyright: 2012, Artyom Beilis (Tonkikh)
License: BSL-1.0

Files: libraries/boost_aux/tools/bcp/add_dependent_lib.cpp
 libraries/boost_aux/tools/bcp/add_path.cpp
 libraries/boost_aux/tools/bcp/bcp.hpp
 libraries/boost_aux/tools/bcp/bcp_imp.cpp
 libraries/boost_aux/tools/bcp/bcp_imp.hpp
 libraries/boost_aux/tools/bcp/copy_path.cpp
 libraries/boost_aux/tools/bcp/file_types.cpp
 libraries/boost_aux/tools/bcp/fileview.cpp
 libraries/boost_aux/tools/bcp/fileview.hpp
 libraries/boost_aux/tools/bcp/licence_info.hpp
 libraries/boost_aux/tools/bcp/main.cpp
 libraries/boost_aux/tools/bcp/output_licence_info.cpp
 libraries/boost_aux/tools/bcp/path_operations.cpp
Copyright: 2003, Dr John Maddock
  2009, Dr John Maddock
License: BSL-1.0

Files: libraries/boost_aux/boost/utility/detail/member_dereference.hpp
 libraries/boost_aux/boost/utility/detail/restricted.hpp
 libraries/boost_aux/boost/utility/detail/singleton_manager.hpp
 libraries/boost_aux/boost/utility/mutexed_singleton.hpp
 libraries/boost_aux/boost/utility/singleton.hpp
 libraries/boost_aux/boost/utility/thread_specific_singleton.hpp
Copyright: 2007, Tobias Schwinger
License: BSL-1.0

Files: libraries/boost_aux/boost/enum.hpp
 libraries/boost_aux/boost/enum/base.hpp
 libraries/boost_aux/boost/enum/bitfield.hpp
 libraries/boost_aux/boost/enum/iterator.hpp
 libraries/boost_aux/boost/enum/macros.hpp
Copyright: 2005, Frank Laub
License: BSL-1.0

Files: libraries/boost_aux/libs/thread/src/win32/tss_pe-before_1_44.cpp
 libraries/boost_aux/libs/thread/src/win32/tss_pe.cpp
Copyright: 2007, Anthony Williams
  2007, David Deakins
  2007, Roland Schwarz
  Aaron W. LaFramboise, Roland Schwarz, Michael Glassford 2004.
License: BSL-1.0

Files: libraries/boost_aux/boost/iostreams/arbitrary_positional_facade.hpp
 libraries/boost_aux/boost/iostreams/filter/base64.hpp
Copyright: 2006, 2007, Takeshi Mouri
License: BSL-1.0

Files: libraries/libsvm-3.0/svm.cpp
 libraries/libsvm-3.0/svm.h
Copyright: 2000-2010, Chih-Chung Chang 
 2000-2010, Chih-Jen Lin
License: BSD-2-clause

Files: libraries/CSpline/CSpline.cpp
 libraries/CSpline/CSpline.h
Copyright: 2014, James Bremner
License: BSD-2-clause

Files: libraries/libsvm-3.0/svm-model2code.cpp
Copyright: 2010, Vanderbilt University - Nashville, TN 37232
License: Apache-2.0

Files: libraries/boost_aux/tools/bcp/scan_cvs_path.cpp
Copyright: 2003, -7 John Maddock
  2007, Bjorn Roald
License: BSL-1.0

Files: libraries/boost_aux/boost/foreach_field.hpp
Copyright: 2009, Chris Purcell.
License: BSL-1.0

Files: libraries/boost_aux/tools/bcp/scan_licence.cpp
Copyright: 2003, Dr John Maddock
License: BSL-1.0

Files: libraries/boost_aux/boost/interprocess/detail/win32_api.hpp
Copyright: Ion Gaztanaga 2005-2012. Distributed under the Boost
License: BSL-1.0

Files: libraries/boost_aux/tools/bcp/licence_info.cpp
Copyright: 2003 Dr John Maddock
License: BSL-1.0

Files: pwiz/Version.hpp
 pwiz/analysis/common/CwtPeakDetectorTest.cpp
 pwiz/analysis/common/ExtraZeroSamplesFilter.cpp
 pwiz/analysis/common/ExtraZeroSamplesFilter.hpp
 pwiz/analysis/common/ExtraZeroSamplesFilterTest.cpp
 pwiz/analysis/common/LocalMaximumPeakDetectorTest.cpp
 pwiz/analysis/common/SavitzkyGolaySmootherTest.cpp
 pwiz/analysis/common/WhittakerSmootherTest.cpp
 pwiz/analysis/common/ZeroSampleFillerTest.cpp
 pwiz/analysis/frequency/MagnitudeLorentzianTestData.cpp
 pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp
 pwiz/analysis/passive/MSDataAnalyzer.cpp
 pwiz/analysis/passive/MSDataAnalyzer.hpp
 pwiz/analysis/passive/MSDataAnalyzerTest.cpp
 pwiz/analysis/passive/MSDataCache.cpp
 pwiz/analysis/passive/MSDataCache.hpp
 pwiz/analysis/passive/MSDataCacheTest.cpp
 pwiz/analysis/passive/MetadataReporter.cpp
 pwiz/analysis/passive/MetadataReporter.hpp
 pwiz/analysis/passive/PepXMLCat.cpp
 pwiz/analysis/passive/PepXMLCat.hpp
 pwiz/analysis/passive/RegionAnalyzer.cpp
 pwiz/analysis/passive/RegionAnalyzer.hpp
 pwiz/analysis/passive/RegionSIC.cpp
 pwiz/analysis/passive/RegionSIC.hpp
 pwiz/analysis/passive/RegionSlice.cpp
 pwiz/analysis/passive/RegionSlice.hpp
 pwiz/analysis/passive/RegionTIC.cpp
 pwiz/analysis/passive/RegionTIC.hpp
 pwiz/analysis/passive/SpectrumBinaryData.cpp
 pwiz/analysis/passive/SpectrumBinaryData.hpp
 pwiz/analysis/passive/SpectrumTable.cpp
 pwiz/analysis/passive/SpectrumTable.hpp
 pwiz/analysis/peakdetect/FeatureDetector.hpp
 pwiz/analysis/peakdetect/FeatureDetectorSimple.cpp
 pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp
 pwiz/analysis/peakdetect/FeatureDetectorSimpleTest.cpp
 pwiz/analysis/peakdetect/PeakFamilyDetector.cpp
 pwiz/analysis/peakdetect/PeakFamilyDetector.hpp
 pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp
 pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp
 pwiz/analysis/peakdetect/PeakFamilyDetectorFTTest.cpp
 pwiz/analysis/peakdetect/PeakFamilyDetectorFTTestData.cpp
 pwiz/analysis/peakdetect/msextract.cpp
 pwiz/analysis/peptideid/PeptideID.hpp
 pwiz/analysis/peptideid/PeptideIDMap.cpp
 pwiz/analysis/peptideid/PeptideIDMap.hpp
 pwiz/analysis/peptideid/PeptideIDMapTest.cpp
 pwiz/analysis/peptideid/PeptideID_flat.cpp
 pwiz/analysis/peptideid/PeptideID_flat.hpp
 pwiz/analysis/peptideid/PeptideID_flatTest.cpp
 pwiz/analysis/peptideid/PeptideID_pepXML.cpp
 pwiz/analysis/peptideid/PeptideID_pepXML.hpp
 pwiz/analysis/peptideid/PeptideID_pepXMLTest.cpp
 pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp
 pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.cpp
 pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp
 pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefaultTest.cpp
 pwiz/analysis/spectrum_processing/SpectrumListFactory.cpp
 pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp
 pwiz/analysis/spectrum_processing/SpectrumListFactoryTest.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_Filter.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_FilterTest.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculatorTest.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefineTest.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_SorterTest.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp
 pwiz/data/common/CVTranslator.cpp
 pwiz/data/common/CVTranslator.hpp
 pwiz/data/common/CVTranslatorTest.cpp
 pwiz/data/common/ParamTypes.cpp
 pwiz/data/common/ParamTypes.hpp
 pwiz/data/common/ParamTypesTest.cpp
 pwiz/data/common/cv.cpp
 pwiz/data/common/cv.inl
 pwiz/data/common/cvtest.cpp
 pwiz/data/common/diff_std.cpp
 pwiz/data/common/diff_std.hpp
 pwiz/data/common/diff_std_test.cpp
 pwiz/data/common/obo.cpp
 pwiz/data/common/obo.hpp
 pwiz/data/common/obotest.cpp
 pwiz/data/identdata/DefaultReaderList.cpp
 pwiz/data/identdata/DefaultReaderList.hpp
 pwiz/data/identdata/DelimReader.cpp
 pwiz/data/identdata/DelimReader.hpp
 pwiz/data/identdata/DelimWriter.cpp
 pwiz/data/identdata/DelimWriter.hpp
 pwiz/data/identdata/Diff.cpp
 pwiz/data/identdata/Diff.hpp
 pwiz/data/identdata/DiffTest.cpp
 pwiz/data/identdata/ExtendedReadTest.cpp
 pwiz/data/identdata/IO.cpp
 pwiz/data/identdata/IO.hpp
 pwiz/data/identdata/IOTest.cpp
 pwiz/data/identdata/IdentData.cpp
 pwiz/data/identdata/IdentData.hpp
 pwiz/data/identdata/IdentDataFile.cpp
 pwiz/data/identdata/IdentDataFile.hpp
 pwiz/data/identdata/IdentDataTest.cpp
 pwiz/data/identdata/KwCVMap.cpp
 pwiz/data/identdata/KwCVMap.hpp
 pwiz/data/identdata/KwCVMapTest.cpp
 pwiz/data/identdata/MascotReader.hpp
 pwiz/data/identdata/MzidPredicates.hpp
 pwiz/data/identdata/Pep2MzIdent.cpp
 pwiz/data/identdata/Pep2MzIdent.hpp
 pwiz/data/identdata/Pep2MzIdentTest.cpp
 pwiz/data/identdata/Reader.cpp
 pwiz/data/identdata/Reader.hpp
 pwiz/data/identdata/ReaderTest.cpp
 pwiz/data/identdata/References.cpp
 pwiz/data/identdata/References.hpp
 pwiz/data/identdata/ReferencesTest.cpp
 pwiz/data/identdata/Serializer_Text.cpp
 pwiz/data/identdata/Serializer_Text.hpp
 pwiz/data/identdata/Serializer_Text_Test.cpp
 pwiz/data/identdata/Serializer_mzid.cpp
 pwiz/data/identdata/Serializer_mzid.hpp
 pwiz/data/identdata/Serializer_mzid_Test.cpp
 pwiz/data/identdata/Serializer_protXML.cpp
 pwiz/data/identdata/Serializer_protXML.hpp
 pwiz/data/identdata/Serializer_protXML_Test.cpp
 pwiz/data/identdata/TextWriter.hpp
 pwiz/data/identdata/examples.cpp
 pwiz/data/identdata/examples.hpp
 pwiz/data/misc/FrequencyDataTestData.cpp
 pwiz/data/misc/FrequencyDataTestData.hpp
 pwiz/data/misc/MinimumPepXML.cpp
 pwiz/data/misc/MinimumPepXML.hpp
 pwiz/data/misc/MinimumPepXMLTest.cpp
 pwiz/data/misc/PeakData.cpp
 pwiz/data/misc/PeakData.hpp
 pwiz/data/misc/PeakDataTest.cpp
 pwiz/data/msdata/BinaryDataEncoder.cpp
 pwiz/data/msdata/BinaryDataEncoder.hpp
 pwiz/data/msdata/BinaryDataEncoderTest.cpp
 pwiz/data/msdata/ChromatogramListBase.hpp
 pwiz/data/msdata/ChromatogramListBaseTest.cpp
 pwiz/data/msdata/ChromatogramList_mzML.cpp
 pwiz/data/msdata/ChromatogramList_mzML.hpp
 pwiz/data/msdata/ChromatogramList_mzML_Test.cpp
 pwiz/data/msdata/DefaultReaderList.cpp
 pwiz/data/msdata/DefaultReaderList.hpp
 pwiz/data/msdata/Diff.cpp
 pwiz/data/msdata/Diff.hpp
 pwiz/data/msdata/DiffTest.cpp
 pwiz/data/msdata/IO.cpp
 pwiz/data/msdata/IO.hpp
 pwiz/data/msdata/IOTest.cpp
 pwiz/data/msdata/LegacyAdapter.cpp
 pwiz/data/msdata/LegacyAdapter.hpp
 pwiz/data/msdata/LegacyAdapterTest.cpp
 pwiz/data/msdata/MSData.cpp
 pwiz/data/msdata/MSData.hpp
 pwiz/data/msdata/MSDataFile.cpp
 pwiz/data/msdata/MSDataFile.hpp
 pwiz/data/msdata/MSDataFileTest.cpp
 pwiz/data/msdata/MSDataTest.cpp
 pwiz/data/msdata/MSnReaderTest.cpp
 pwiz/data/msdata/Reader.cpp
 pwiz/data/msdata/Reader.hpp
 pwiz/data/msdata/ReaderTest.cpp
 pwiz/data/msdata/References.cpp
 pwiz/data/msdata/References.hpp
 pwiz/data/msdata/ReferencesTest.cpp
 pwiz/data/msdata/SHA1OutputObserver.hpp
 pwiz/data/msdata/Serializer_mzML.cpp
 pwiz/data/msdata/Serializer_mzML.hpp
 pwiz/data/msdata/Serializer_mzML_Test.cpp
 pwiz/data/msdata/Serializer_mzXML.cpp
 pwiz/data/msdata/Serializer_mzXML.hpp
 pwiz/data/msdata/Serializer_mzXML_Test.cpp
 pwiz/data/msdata/SpectrumInfo.cpp
 pwiz/data/msdata/SpectrumInfo.hpp
 pwiz/data/msdata/SpectrumInfoTest.cpp
 pwiz/data/msdata/SpectrumIterator.cpp
 pwiz/data/msdata/SpectrumIterator.hpp
 pwiz/data/msdata/SpectrumIteratorTest.cpp
 pwiz/data/msdata/SpectrumListBase.hpp
 pwiz/data/msdata/SpectrumListBaseTest.cpp
 pwiz/data/msdata/SpectrumListWrapper.hpp
 pwiz/data/msdata/SpectrumListWrapperTest.cpp
 pwiz/data/msdata/SpectrumList_MGF_Test.cpp
 pwiz/data/msdata/SpectrumList_MSn_Test.cpp
 pwiz/data/msdata/SpectrumList_mzML.cpp
 pwiz/data/msdata/SpectrumList_mzML.hpp
 pwiz/data/msdata/SpectrumList_mzML_Test.cpp
 pwiz/data/msdata/SpectrumList_mzXML.cpp
 pwiz/data/msdata/SpectrumList_mzXML.hpp
 pwiz/data/msdata/SpectrumList_mzXML_Test.cpp
 pwiz/data/msdata/TextWriter.hpp
 pwiz/data/msdata/examples.cpp
 pwiz/data/msdata/examples.hpp
 pwiz/data/proteome/DefaultReaderList.cpp
 pwiz/data/proteome/DefaultReaderList.hpp
 pwiz/data/proteome/Diff.cpp
 pwiz/data/proteome/Diff.hpp
 pwiz/data/proteome/DiffTest.cpp
 pwiz/data/proteome/ProteinListWrapper.hpp
 pwiz/data/proteome/ProteinListWrapperTest.cpp
 pwiz/data/proteome/ProteomeDataFile.cpp
 pwiz/data/proteome/ProteomeDataFile.hpp
 pwiz/data/proteome/ProteomeDataFileTest.cpp
 pwiz/data/proteome/Reader_FASTA.cpp
 pwiz/data/proteome/Reader_FASTA.hpp
 pwiz/data/vendor_readers/ExtendedReaderList.cpp
 pwiz/data/vendor_readers/ExtendedReaderList.hpp
 pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.cpp
 pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp
 pwiz/data/vendor_readers/Thermo/Reader_Thermo.cpp
 pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp
 pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.cpp
 pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp
 pwiz/data/vendor_readers/Thermo/Reader_Thermo_Test.cpp
 pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.cpp
 pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp
 pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp
 pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp
 pwiz/utility/chemistry/IsotopeEnvelopeEstimatorTest.cpp
 pwiz/utility/math/LinearSolver.hpp
 pwiz/utility/math/MatchedFilter.hpp
 pwiz/utility/math/MatchedFilterTest.cpp
 pwiz/utility/math/round.hpp
 pwiz/utility/minimxml/SAXParserTest.cpp
 pwiz/utility/minimxml/XMLWriter.cpp
 pwiz/utility/minimxml/XMLWriter.hpp
 pwiz/utility/minimxml/XMLWriterTest.cpp
 pwiz/utility/misc/Base64Test.cpp
 pwiz/utility/misc/IntegerSet.cpp
 pwiz/utility/misc/IntegerSet.hpp
 pwiz/utility/misc/IntegerSetTest.cpp
 pwiz/utility/misc/IterationListener.cpp
 pwiz/utility/misc/IterationListener.hpp
 pwiz/utility/misc/IterationListenerTest.cpp
 pwiz/utility/misc/MSIHandler.cpp
 pwiz/utility/misc/MSIHandler.hpp
 pwiz/utility/misc/SHA1Calculator.cpp
 pwiz/utility/misc/SHA1Calculator.hpp
 pwiz/utility/misc/SHA1CalculatorTest.cpp
 pwiz/utility/misc/SHA1_ostream.hpp
 pwiz/utility/misc/SHA1_ostream_test.cpp
 pwiz/utility/misc/TabReader.cpp
 pwiz/utility/misc/TabReader.hpp
 pwiz/utility/misc/Timer.hpp
 pwiz/utility/misc/endian.hpp
 pwiz/utility/misc/endian_test.cpp
Copyright: 2007, Spielberg Family Center for Applied Proteomics
  2008, Spielberg Family Center for Applied Proteomics
  2009, Spielberg Family Center for Applied Proteomics
  2010, Spielberg Family Center for Applied Proteomics
  2012, Spielberg Family Center for Applied Proteomics
License: Apache-2.0

Files: pwiz/analysis/common/CwtPeakDetector.cpp
 pwiz/analysis/common/CwtPeakDetector.hpp
 pwiz/analysis/common/LocalMaximumPeakDetector.cpp
 pwiz/analysis/common/LocalMaximumPeakDetector.hpp
 pwiz/analysis/common/PeakDetector.hpp
 pwiz/analysis/common/SavitzkyGolaySmoother.cpp
 pwiz/analysis/common/SavitzkyGolaySmoother.hpp
 pwiz/analysis/common/Smoother.hpp
 pwiz/analysis/common/WhittakerSmoother.cpp
 pwiz/analysis/common/WhittakerSmoother.hpp
 pwiz/analysis/common/ZeroSampleFiller.cpp
 pwiz/analysis/common/ZeroSampleFiller.hpp
 pwiz/analysis/passive/RunSummary.cpp
 pwiz/analysis/passive/RunSummary.hpp
 pwiz/analysis/proteome_processing/ProteinListFactory.cpp
 pwiz/analysis/proteome_processing/ProteinListFactory.hpp
 pwiz/analysis/proteome_processing/ProteinListFactoryTest.cpp
 pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.cpp
 pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp
 pwiz/analysis/proteome_processing/ProteinList_DecoyGeneratorTest.cpp
 pwiz/analysis/proteome_processing/ProteinList_Filter.cpp
 pwiz/analysis/proteome_processing/ProteinList_Filter.hpp
 pwiz/analysis/proteome_processing/ProteinList_FilterTest.cpp
 pwiz/analysis/spectrum_processing/MS2DeisotoperTest.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_3D.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_3D_Test.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotopeTest.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculatorTest.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_IonMobility_Test.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefinerTest.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixerTest.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_PeakFilterTest.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_ScanSummerTest.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_Smoother.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp
 pwiz/analysis/spectrum_processing/ThresholdFilter.cpp
 pwiz/analysis/spectrum_processing/ThresholdFilter.hpp
 pwiz/data/common/BinaryIndexStream.cpp
 pwiz/data/common/BinaryIndexStream.hpp
 pwiz/data/common/BinaryIndexStreamTest.cpp
 pwiz/data/common/Index.hpp
 pwiz/data/common/MemoryIndex.cpp
 pwiz/data/common/MemoryIndex.hpp
 pwiz/data/common/MemoryIndexTest.cpp
 pwiz/data/common/Unimod.cpp
 pwiz/data/common/Unimod.hpp
 pwiz/data/common/UnimodTest.cpp
 pwiz/data/identdata/Serializer_pepXML.cpp
 pwiz/data/identdata/Serializer_pepXML.hpp
 pwiz/data/identdata/Serializer_pepXML_Test.cpp
 pwiz/data/identdata/Version.hpp
 pwiz/data/msdata/Index_mzML.cpp
 pwiz/data/msdata/Index_mzML.hpp
 pwiz/data/msdata/MSDataMerger.cpp
 pwiz/data/msdata/MSDataMerger.hpp
 pwiz/data/msdata/MSDataMergerTest.cpp
 pwiz/data/msdata/MemoryMRUCache.hpp
 pwiz/data/msdata/Serializer_MGF.cpp
 pwiz/data/msdata/Serializer_MGF.hpp
 pwiz/data/msdata/Serializer_MGF_Test.cpp
 pwiz/data/msdata/Serializer_MSn.cpp
 pwiz/data/msdata/Serializer_MSn.hpp
 pwiz/data/msdata/Serializer_MSn_Test.cpp
 pwiz/data/msdata/SpectrumListCache.cpp
 pwiz/data/msdata/SpectrumListCache.hpp
 pwiz/data/msdata/SpectrumListCacheTest.cpp
 pwiz/data/msdata/SpectrumWorkerThreads.cpp
 pwiz/data/msdata/SpectrumWorkerThreads.hpp
 pwiz/data/proteome/ProteinListCache.cpp
 pwiz/data/proteome/ProteinListCache.hpp
 pwiz/data/proteome/ProteinListCacheTest.cpp
 pwiz/data/proteome/ProteomeData.cpp
 pwiz/data/proteome/ProteomeData.hpp
 pwiz/data/proteome/ProteomeDataTest.cpp
 pwiz/data/proteome/Reader.cpp
 pwiz/data/proteome/Reader.hpp
 pwiz/data/proteome/ReaderTest.cpp
 pwiz/data/proteome/Serializer_FASTA.cpp
 pwiz/data/proteome/Serializer_FASTA.hpp
 pwiz/data/proteome/Serializer_FASTA_Test.cpp
 pwiz/data/proteome/TextWriter.hpp
 pwiz/data/proteome/examples.cpp
 pwiz/data/proteome/examples.hpp
 pwiz/data/tradata/DefaultReaderList.cpp
 pwiz/data/tradata/DefaultReaderList.hpp
 pwiz/data/tradata/Diff.cpp
 pwiz/data/tradata/Diff.hpp
 pwiz/data/tradata/DiffTest.cpp
 pwiz/data/tradata/IO.cpp
 pwiz/data/tradata/IO.hpp
 pwiz/data/tradata/IOTest.cpp
 pwiz/data/tradata/Reader.cpp
 pwiz/data/tradata/Reader.hpp
 pwiz/data/tradata/ReaderTest.cpp
 pwiz/data/tradata/References.cpp
 pwiz/data/tradata/References.hpp
 pwiz/data/tradata/ReferencesTest.cpp
 pwiz/data/tradata/Serializer_traML.cpp
 pwiz/data/tradata/Serializer_traML.hpp
 pwiz/data/tradata/Serializer_traML_Test.cpp
 pwiz/data/tradata/TextWriter.hpp
 pwiz/data/tradata/TraData.cpp
 pwiz/data/tradata/TraData.hpp
 pwiz/data/tradata/TraDataFile.cpp
 pwiz/data/tradata/TraDataFile.hpp
 pwiz/data/tradata/TraDataFileTest.cpp
 pwiz/data/tradata/TraDataTest.cpp
 pwiz/data/tradata/Version.hpp
 pwiz/data/tradata/examples.cpp
 pwiz/data/tradata/examples.hpp
 pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.cpp
 pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp
 pwiz/data/vendor_readers/ABI/Reader_ABI.cpp
 pwiz/data/vendor_readers/ABI/Reader_ABI.hpp
 pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.cpp
 pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp
 pwiz/data/vendor_readers/ABI/Reader_ABI_Test.cpp
 pwiz/data/vendor_readers/ABI/SpectrumList_ABI.cpp
 pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp
 pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.cpp
 pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp
 pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D_Test.cpp
 pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.cpp
 pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp
 pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.cpp
 pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp
 pwiz/data/vendor_readers/Agilent/Reader_Agilent.cpp
 pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp
 pwiz/data/vendor_readers/Agilent/Reader_Agilent_Test.cpp
 pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.cpp
 pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp
 pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.cpp
 pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp
 pwiz/data/vendor_readers/Bruker/Reader_Bruker.cpp
 pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp
 pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.cpp
 pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp
 pwiz/data/vendor_readers/Bruker/Reader_Bruker_Test.cpp
 pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.cpp
 pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp
 pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.cpp
 pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp
 pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.cpp
 pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp
 pwiz/data/vendor_readers/UIMF/Reader_UIMF.cpp
 pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp
 pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.cpp
 pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp
 pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.cpp
 pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp
 pwiz/data/vendor_readers/Waters/Reader_Waters.cpp
 pwiz/data/vendor_readers/Waters/Reader_Waters.hpp
 pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.cpp
 pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp
 pwiz/data/vendor_readers/Waters/Reader_Waters_Test.cpp
 pwiz/data/vendor_readers/Waters/SpectrumList_Waters.cpp
 pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp
 pwiz/utility/misc/ClickwrapPrompter.cpp
 pwiz/utility/misc/ClickwrapPrompter.hpp
 pwiz/utility/misc/ClickwrapPrompterTest.cpp
 pwiz/utility/misc/DateTime.hpp
 pwiz/utility/misc/DateTimeTest.cpp
 pwiz/utility/misc/Environment.hpp
 pwiz/utility/misc/ExceptionTest.cpp
 pwiz/utility/misc/Once.hpp
 pwiz/utility/misc/Singleton.hpp
 pwiz/utility/misc/Std.hpp
 pwiz/utility/misc/TabReaderTest.cpp
 pwiz/utility/misc/VendorReaderTestHarness.cpp
 pwiz/utility/misc/VendorReaderTestHarness.hpp
 pwiz/utility/misc/cpp_cli_utilities.hpp
 pwiz/utility/misc/mru_list_test.cpp
 pwiz/utility/misc/shared_map.hpp
Copyright: 2008, Vanderbilt University - Nashville, TN 37232
  2009, Vanderbilt University - Nashville, TN 37232
  2010, Vanderbilt University - Nashville, TN 37232
  2011, Vanderbilt University - Nashville, TN 37232
  2012, Vanderbilt University - Nashville, TN 37232
  2014, Vanderbilt University - Nashville, TN 37232
  2015, Vanderbilt University - Nashville, TN 37232
  2016, Vanderbilt University - Nashville, TN 37232
License: Apache-2.0

Files: pwiz/analysis/demux/DemuxSolver.cpp
 pwiz/analysis/demux/DemuxSolver.hpp
 pwiz/analysis/demux/DemuxTypes.hpp
 pwiz/analysis/demux/FSDemux.cpp
 pwiz/analysis/demux/IDemultiplexer.hpp
 pwiz/analysis/demux/IPrecursorMaskCodec.hpp
 pwiz/analysis/demux/MSXDemultiplexer.cpp
 pwiz/analysis/demux/MSXDemultiplexer.hpp
 pwiz/analysis/demux/OverlapDemultiplexer.cpp
 pwiz/analysis/demux/OverlapDemultiplexer.hpp
 pwiz/analysis/demux/PrecursorMaskCodec.cpp
 pwiz/analysis/demux/PrecursorMaskCodec.hpp
 pwiz/analysis/demux/SpectrumPeakExtractor.cpp
 pwiz/analysis/demux/SpectrumPeakExtractor.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp
Copyright: Jarret Egertson <jegertso .@. uw.edu>
License: Apache-2.0

Files: pwiz/analysis/demux/CubicHermiteSpline.cpp
 pwiz/analysis/demux/CubicHermiteSpline.cpp
 pwiz/analysis/demux/CubicHermiteSpline.hpp
 pwiz/analysis/demux/CubicHermiteSpline.hpp
 pwiz/analysis/demux/CubicHermiteSplineTest.cpp
 pwiz/analysis/demux/DemuxDebugReadWriteTest.cpp
 pwiz/analysis/demux/DemuxDebugReader.cpp
 pwiz/analysis/demux/DemuxDebugReader.hpp
 pwiz/analysis/demux/DemuxDebugWriter.cpp
 pwiz/analysis/demux/DemuxDebugWriter.hpp
 pwiz/analysis/demux/DemuxHelpers.cpp
 pwiz/analysis/demux/DemuxHelpers.cpp
 pwiz/analysis/demux/DemuxHelpers.hpp
 pwiz/analysis/demux/DemuxHelpersTest.cpp
 pwiz/analysis/demux/DemuxSolverTest.cpp
 pwiz/analysis/demux/DemuxTypes.hpp
 pwiz/analysis/demux/EnumConstantNotPresentException.hpp
 pwiz/analysis/demux/IInterpolation.hpp
 pwiz/analysis/demux/MatrixIO.cpp
 pwiz/analysis/demux/MatrixIO.hpp
 pwiz/analysis/demux/MatrixIOTest.cpp
 pwiz/analysis/demux/SpectrumPeakExtractorTest.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_DemuxTest.cpp
Copyright: Austin Keller <atkeller .@. uw.edu>
License: Apache-2.0

Files: pwiz/analysis/spectrum_processing/MS2DeisotoperTest.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_3D.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_3D_Test.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotopeTest.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculatorTest.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_PeakFilterTest.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_ScanSummerTest.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_Smoother.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_Sorter.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp
 pwiz/analysis/spectrum_processing/ThresholdFilter.cpp
 pwiz/analysis/spectrum_processing/ThresholdFilter.hpp
Copyright: 2008 Vanderbilt University
License: Apache-2.0

Files: pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixerTest.cpp
Copyright: 2009 Vanderbilt University
License: Apache-2.0

Files: pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefinerTest.cpp
Copyright: 2015 Vanderbilt University
License: Apache-2.0

Files: pwiz/analysis/spectrum_processing/SpectrumList_IonMobility_Test.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp
Copyright: 2016 Vanderbilt University
License: Apache-2.0

Files: pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp
 pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.cpp
 pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp
 pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefaultTest.cpp
 pwiz/analysis/spectrum_processing/SpectrumListFactory.cpp
 pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp
 pwiz/analysis/spectrum_processing/SpectrumListFactoryTest.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_Filter.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_FilterTest.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculatorTest.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefineTest.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_Sorter.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_SorterTest.cpp
Copyright: 2008 Spielberg Family Center for Applied Proteomics
License: Apache-2.0

Files: pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp
Copyright: 2012 Spielberg Family Center for Applied Proteomics
License: Apache-2.0

Files: pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_MZWindowTest.cpp
Copyright: 2009 Center for Applied Molecular Medicine
License: Apache-2.0

Files: pwiz/analysis/spectrum_processing/MS2Deisotoper.cpp
 pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp
 pwiz/analysis/spectrum_processing/MS2NoiseFilter.cpp
 pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp
 pwiz/analysis/spectrum_processing/PrecursorMassFilter.cpp
 pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.cpp
Copyright: 2009 Institute for Systems Biology, Seattle, WAO
License: Apache-2.0

Files: pwiz/data/identdata/Serializer_Text.cpp
 pwiz/data/identdata/Serializer_Text.hpp
 pwiz/data/identdata/Serializer_mzid.hpp
 pwiz/data/identdata/examples.cpp
 pwiz/data/identdata/examples.hpp
Copyright: 2008 Spielberg Family Center for Applied Proteomics
License: Apache-2.0

Files: pwiz/data/identdata/DefaultReaderList.cpp
 pwiz/data/identdata/DefaultReaderList.hpp
 pwiz/data/identdata/Diff.cpp
 pwiz/data/identdata/Diff.hpp
 pwiz/data/identdata/DiffTest.cpp
 pwiz/data/identdata/ExtendedReadTest.cpp
 pwiz/data/identdata/IO.cpp
 pwiz/data/identdata/IO.hpp
 pwiz/data/identdata/IOTest.cpp
 pwiz/data/identdata/IdentData.cpp
 pwiz/data/identdata/IdentData.hpp
 pwiz/data/identdata/IdentDataFile.cpp
 pwiz/data/identdata/IdentDataFile.hpp
 pwiz/data/identdata/IdentDataTest.cpp
 pwiz/data/identdata/Pep2MzIdent.cpp
 pwiz/data/identdata/Pep2MzIdent.hpp
 pwiz/data/identdata/Pep2MzIdentTest.cpp
 pwiz/data/identdata/Reader.cpp
 pwiz/data/identdata/Reader.hpp
 pwiz/data/identdata/ReaderTest.cpp
 pwiz/data/identdata/References.cpp
 pwiz/data/identdata/References.hpp
 pwiz/data/identdata/ReferencesTest.cpp
 pwiz/data/identdata/Serializer_mzid.cpp
 pwiz/data/identdata/Serializer_mzid_Test.cpp
 pwiz/data/identdata/TextWriter.hpp
Copyright: 2009 Spielberg Family Center for Applied Proteomics
License: Apache-2.0

Files: pwiz/data/identdata/DelimReader.cpp
 pwiz/data/identdata/DelimReader.hpp
 pwiz/data/identdata/DelimWriter.cpp
 pwiz/data/identdata/DelimWriter.hpp
 pwiz/data/identdata/KwCVMap.cpp
 pwiz/data/identdata/KwCVMap.hpp
 pwiz/data/identdata/KwCVMapTest.cpp
 pwiz/data/identdata/MascotReader.hpp
 pwiz/data/identdata/MzidPredicates.hpp
 pwiz/data/identdata/Serializer_Text_Test.cpp
Copyright: 2010 Spielberg Family Center for Applied Proteomics
License: Apache-2.0

Files: pwiz/data/identdata/Serializer_protXML.cpp
 pwiz/data/identdata/Serializer_protXML.hpp
 pwiz/data/identdata/Serializer_protXML_Test.cpp
Copyright: 2012 Spielberg Family Center for Applied Proteomics
License: Apache-2.0


Files: pwiz/utility/findmf/base/base/interpolate.hpp
 pwiz/utility/findmf/base/base/copy_iftest.cpp
 pwiz/utility/findmf/base/base/constants.hpp
 pwiz/utility/findmf/base/base/scale.hpp
 pwiz/utility/findmf/base/base/diff.hpp
 pwiz/utility/findmf/base/base/cumsum.hpp
 pwiz/utility/findmf/base/base/utilities/interpolation.hpp
 pwiz/utility/findmf/base/base/utilities/base.hpp
 pwiz/utility/findmf/base/base/cumsumtest.cpp
 pwiz/utility/findmf/base/base/basetest.cpp
 pwiz/utility/findmf/base/base/equispaceinterpolationtest.cpp
 pwiz/utility/findmf/base/base/difftest.cpp
 pwiz/utility/findmf/base/base/copyif.hpp
 pwiz/utility/findmf/base/base/base.hpp
 pwiz/utility/findmf/base/resample/bin1d.hpp
 pwiz/utility/findmf/base/resample/bucket1d.hpp
 pwiz/utility/findmf/base/resample/masscomparefunctors.hpp
 pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp
 pwiz/utility/findmf/base/resample/convert2dense.hpp
 pwiz/utility/findmf/base/resample/determinbinwithtest.cpp
 pwiz/utility/findmf/base/resample/bucket1dtest.cpp
 pwiz/utility/findmf/base/resample/determinebinwidth.hpp
 pwiz/utility/findmf/base/resample/convert2densetest.cpp
 pwiz/utility/findmf/base/resample/breakspec.hpp
 pwiz/utility/findmf/base/filter/filter.hpp
 pwiz/utility/findmf/base/filter/utilities/gauss.hpp
 pwiz/utility/findmf/base/filter/utilities/preparedata.hpp
 pwiz/utility/findmf/base/filter/utilities/mexhat.hpp
 pwiz/utility/findmf/base/filter/filterutilstest.cpp
 pwiz/utility/findmf/base/filter/gaussfilter.hpp
 pwiz/utility/findmf/base/filter/gaussfiltertest.cpp
 pwiz/utility/findmf/base/ms/peakpickerqtof.hpp
 pwiz/utility/findmf/base/ms/simplepickertest.cpp
 pwiz/utility/findmf/base/ms/simplepicker.hpp
Copyright: ETH Zurich - Witold Wolski <wewolski@gmail.com>
License: Apache-2.0

Files: pwiz/utility/math/HouseholderQR.hpp
 pwiz/utility/math/LinearLeastSquares.hpp
 pwiz/utility/math/LinearLeastSquaresTest.cpp
 pwiz/utility/math/Types.hpp
 pwiz/utility/math/qr.hpp
Copyright: Robert Burke <robert.burke@gmail.com>
License: Apache-2.0

Files: pwiz/utility/math/LinearSolver.hpp
 pwiz/utility/math/LinearSolverTest.cpp
 pwiz/utility/math/MatchedFilter.hpp
 pwiz/utility/math/MatchedFilterTest.cpp
 pwiz/utility/math/OrderedPair.hpp
 pwiz/utility/math/OrderedPairTest.cpp
 pwiz/utility/math/Parabola.cpp
 pwiz/utility/math/Parabola.hpp
 pwiz/utility/math/ParabolaTest.cpp
 pwiz/utility/math/Stats.cpp
 pwiz/utility/math/Stats.hpp
 pwiz/utility/math/StatsTest.cpp
 pwiz/utility/math/erf.cpp
 pwiz/utility/math/erf.hpp
 pwiz/utility/math/erfTest.cpp
 pwiz/utility/math/round.hpp
Copyright: Darren Kessner <darren@proteowizard.org>
License: Apache-2.0

Files: pwiz/utility/misc/FailTest.cpp
 pwiz/utility/chemistry/iso.cpp
 pwiz/utility/chemistry/parse_isotopes.cpp
 pwiz/utility/math/qrTest.cpp
 pwiz/utility/math/HouseholderQRTest.cpp
Copyright: Matthew Chambers
License: Apache-2.0

Files: pwiz/analysis/frequency/DerivativeTest.hpp
 pwiz/analysis/frequency/FrequencyEstimator.hpp
 pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp
 pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp
 pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp
 pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp
 pwiz/analysis/frequency/FrequencyEstimatorSimpleTest.cpp
 pwiz/analysis/frequency/MagnitudeLorentzian.cpp
 pwiz/analysis/frequency/MagnitudeLorentzian.hpp
 pwiz/analysis/frequency/MagnitudeLorentzianTest.cpp
 pwiz/analysis/frequency/ParameterEstimator.cpp
 pwiz/analysis/frequency/ParameterEstimator.hpp
 pwiz/analysis/frequency/ParametrizedFunction.hpp
 pwiz/analysis/frequency/ParametrizedFunctionTest.cpp
 pwiz/analysis/frequency/PeakDetector.hpp
 pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp
 pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp
 pwiz/analysis/frequency/PeakDetectorMatchedFilterTest.cpp
 pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.cpp
 pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.hpp
 pwiz/analysis/frequency/PeakDetectorNaive.cpp
 pwiz/analysis/frequency/PeakDetectorNaive.hpp
 pwiz/analysis/frequency/PeakDetectorNaiveTest.cpp
 pwiz/analysis/frequency/TruncatedLorentzian.cpp
 pwiz/analysis/frequency/TruncatedLorentzian.hpp
 pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp
 pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp
 pwiz/analysis/frequency/TruncatedLorentzianParameters.cpp
 pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp
 pwiz/analysis/frequency/TruncatedLorentzianParametersTest.cpp
 pwiz/analysis/frequency/TruncatedLorentzianTest.cpp
 pwiz/data/misc/CalibrationParameters.hpp
 pwiz/data/misc/CalibrationParametersTest.cpp
 pwiz/data/misc/FrequencyData.cpp
 pwiz/data/misc/FrequencyData.hpp
 pwiz/data/misc/FrequencyDataTest.cpp
 pwiz/data/misc/SampleDatum.hpp
 pwiz/data/misc/SampleDatumTest.cpp
 pwiz/data/proteome/AminoAcid.cpp
 pwiz/data/proteome/AminoAcid.hpp
 pwiz/data/proteome/AminoAcidTest.cpp
 pwiz/data/proteome/Peptide.cpp
 pwiz/data/proteome/Peptide.hpp
 pwiz/data/proteome/PeptideTest.cpp
 pwiz/utility/chemistry/Chemistry.cpp
 pwiz/utility/chemistry/Chemistry.hpp
 pwiz/utility/chemistry/ChemistryData.cpp
 pwiz/utility/chemistry/ChemistryData.hpp
 pwiz/utility/chemistry/ChemistryTest.cpp
 pwiz/utility/chemistry/Ion.hpp
 pwiz/utility/chemistry/IsotopeCalculator.cpp
 pwiz/utility/chemistry/IsotopeCalculator.hpp
 pwiz/utility/chemistry/IsotopeCalculatorTest.cpp
 pwiz/utility/chemistry/IsotopeTable.cpp
 pwiz/utility/chemistry/IsotopeTable.hpp
 pwiz/utility/chemistry/IsotopeTableTest.cpp
 pwiz/utility/math/LinearLeastSquares.hpp
 pwiz/utility/math/LinearLeastSquaresTest.cpp
 pwiz/utility/math/LinearSolverTest.cpp
 pwiz/utility/math/Parabola.cpp
 pwiz/utility/math/Parabola.hpp
 pwiz/utility/math/ParabolaTest.cpp
 pwiz/utility/math/Stats.cpp
 pwiz/utility/math/Stats.hpp
 pwiz/utility/math/StatsTest.cpp
 pwiz/utility/math/Types.hpp
 pwiz/utility/math/erf.cpp
 pwiz/utility/math/erf.hpp
 pwiz/utility/math/erfTest.cpp
 pwiz/utility/math/qr.hpp
 pwiz/utility/misc/Base64.cpp
 pwiz/utility/misc/Base64.hpp
 pwiz/utility/misc/Image.hpp
 pwiz/utility/misc/unit.hpp
 pwiz/utility/proteome/IPIFASTADatabase.cpp
 pwiz/utility/proteome/IPIFASTADatabase.hpp
 pwiz/utility/proteome/IPIFASTADatabaseTest.cpp
 pwiz/utility/proteome/pepdb.cpp
Copyright: 2005, Louis Warschaw Prostate Cancer Center
  2006, Louis Warschaw Prostate Cancer Center
  2007, Louis Warschaw Prostate Cancer Center
License: Apache-2.0

Files: pwiz/analysis/peakdetect/FeatureDetectorPeakel.cpp
 pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp
 pwiz/analysis/peakdetect/FeatureDetectorPeakelTest.cpp
 pwiz/analysis/peakdetect/FeatureDetectorTuningTest.cpp
 pwiz/analysis/peakdetect/FeatureModeler.cpp
 pwiz/analysis/peakdetect/FeatureModeler.hpp
 pwiz/analysis/peakdetect/FeatureModelerTest.cpp
 pwiz/analysis/peakdetect/MZRTField.cpp
 pwiz/analysis/peakdetect/MZRTField.hpp
 pwiz/analysis/peakdetect/MZRTFieldTest.cpp
 pwiz/analysis/peakdetect/Noise.cpp
 pwiz/analysis/peakdetect/Noise.hpp
 pwiz/analysis/peakdetect/NoiseTest.cpp
 pwiz/analysis/peakdetect/PeakExtractor.cpp
 pwiz/analysis/peakdetect/PeakExtractor.hpp
 pwiz/analysis/peakdetect/PeakExtractorTest.cpp
 pwiz/analysis/peakdetect/PeakFinder.cpp
 pwiz/analysis/peakdetect/PeakFinder.hpp
 pwiz/analysis/peakdetect/PeakFinderTest.cpp
 pwiz/analysis/peakdetect/PeakFitter.cpp
 pwiz/analysis/peakdetect/PeakFitter.hpp
 pwiz/analysis/peakdetect/PeakFitterTest.cpp
 pwiz/analysis/peakdetect/PeakelGrower.cpp
 pwiz/analysis/peakdetect/PeakelGrower.hpp
 pwiz/analysis/peakdetect/PeakelGrowerTest.cpp
 pwiz/analysis/peakdetect/PeakelPicker.cpp
 pwiz/analysis/peakdetect/PeakelPicker.hpp
 pwiz/analysis/peakdetect/PeakelPickerTest.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_MZWindowTest.cpp
 pwiz/utility/chemistry/MZTolerance.cpp
 pwiz/utility/chemistry/MZTolerance.hpp
 pwiz/utility/chemistry/MZToleranceTest.cpp
 pwiz/utility/math/OrderedPair.hpp
 pwiz/utility/math/OrderedPairTest.cpp
 pwiz/utility/misc/almost_equal.hpp
 pwiz/utility/misc/almost_equal_test.cpp
Copyright: 2009, Center for Applied Molecular Medicine
License: Apache-2.0

Files: pwiz/analysis/Version.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_Sorter.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp
 pwiz/data/msdata/SpectrumList_BTDX.cpp
 pwiz/data/msdata/SpectrumList_BTDX.hpp
 pwiz/data/msdata/SpectrumList_MGF.cpp
 pwiz/data/msdata/SpectrumList_MGF.hpp
 pwiz/data/msdata/SpectrumList_MSn.cpp
 pwiz/data/msdata/SpectrumList_MSn.hpp
 pwiz/data/msdata/Version.hpp
 pwiz/data/proteome/Version.hpp
 pwiz/utility/misc/CharIndexedVector.hpp
 pwiz/utility/misc/Container.hpp
 pwiz/utility/misc/Exception.hpp
 pwiz/utility/misc/Export.hpp
 pwiz/utility/misc/Filesystem.cpp
 pwiz/utility/misc/Filesystem.hpp
 pwiz/utility/misc/FilesystemTest.cpp
 pwiz/utility/misc/Stream.hpp
 pwiz/utility/misc/String.hpp
 pwiz/utility/misc/optimized_lexical_cast.hpp
 pwiz/utility/misc/virtual_map.hpp
Copyright: 2008, Spielberg Family Center for Applied Proteomics
  2008, Vanderbilt University - Nashville, TN 37232
  2011, Vanderbilt University - Nashville, TN 37232
License: Apache-2.0

Files: pwiz/analysis/common/DataFilter.hpp
 pwiz/analysis/spectrum_processing/MS2Deisotoper.cpp
 pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp
 pwiz/analysis/spectrum_processing/MS2NoiseFilter.cpp
 pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp
 pwiz/analysis/spectrum_processing/PrecursorMassFilter.cpp
 pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp
Copyright: 2009, Institute for Systems Biology, Seattle, WA
License: Apache-2.0

Files: pwiz/data/proteome/Digestion.cpp
 pwiz/data/proteome/Digestion.hpp
 pwiz/data/proteome/DigestionTest.cpp
 pwiz/data/proteome/Modification.cpp
 pwiz/data/proteome/Modification.hpp
Copyright: 2006, Louis Warschaw Prostate Cancer Center
  2008, Vanderbilt University - Nashville, TN 37232
License: Apache-2.0

Files: pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp
 pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp
 pwiz/analysis/spectrum_processing/SpectrumList_MZRefinerTest.cpp
Copyright: 2014, Pacific Northwest National Laboratory
License: Apache-2.0

Files: pwiz/utility/math/MatrixInverse.hpp
Copyright: http://www.crystalclearsoftware.com/cgi-bin/boost_wiki/wiki.pl?Effective_UBLAS/Matrix_Inversion
License: Public-domain or Boost
 Public Domain or Boost Software License - Version 1.0

Files: pwiz/utility/misc/SHA1.cpp
 pwiz/utility/misc/SHA1.h
Copyright: Dominik Reichl <dominik.reichl@t-online.de>
License: Public-domain
 The work is in the public domain.

Files: pwiz/utility/minimxml/SAXParser.cpp
 pwiz/utility/minimxml/SAXParser.hpp
Copyright: 2007, Spielberg Family Center for Applied Proteomics
  2011, Insilicos LLC
License: Apache-2.0

Files: pwiz/data/msdata/MSNumpress.cpp
 pwiz/data/msdata/MSNumpress.hpp
Copyright: 2013, Johan Teleman
License: Apache-2.0

Files: pwiz/analysis/passive/TabularConfig.cpp
 pwiz/analysis/passive/TabularConfig.hpp
Copyright: 2012, University of Minnesota - Minneapolis, MN 55455
License: Apache-2.0

Files: pwiz/utility/misc/random_access_compressed_ifstream.cpp
 pwiz/utility/misc/random_access_compressed_ifstream.hpp
Copyright: 1995-2005, Jean-loup Gailly.
  2005, Mark Adler
  Insilicos LLC 2008,2011
License: Zlib

Files: pwiz/data/common/cvgen.cpp
Copyright: 2007, Spielberg Family Center for Applied Proteomics
License: Apache-2.0

Files: pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.cpp
Copyright: 2010, Institute for Systems Biology
License: Apache-2.0

Files: pwiz/analysis/frequency/FrequencyEstimatorPhysicalModelTest.cpp
Copyright: 2007, Spielberg Family Center for Appled Proteomics
License: Apache-2.0

Files: pwiz/data/common/cv.hpp
Copyright: 2007, Spielberg Family Center for Applied Proteomics
License: Apache-2.0

Files: pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.cpp
Copyright: 2008, Vanderbilt University - Nashville, TN 37232
License: Apache-2.0

Files: pwiz/utility/misc/mru_list.hpp
Copyright: 2003-2008, Joaquin M Lopez Munoz.
License: BSL-1.0


Files: pwiz_tools/commandline/msconvert.cpp
 pwiz_tools/commandline/pepcat.cpp
 pwiz_tools/common/FullReaderList.hpp
 pwiz_tools/common/MSDataAnalyzerApplication.cpp
 pwiz_tools/common/MSDataAnalyzerApplication.hpp
 pwiz_tools/common/MSDataAnalyzerApplicationTest.cpp
 pwiz_tools/examples/hello_analyzer.cpp
 pwiz_tools/examples/hello_analyzer_2.cpp
 pwiz_tools/examples/hello_msdata.cpp
 pwiz_tools/examples/mscat.cpp
 pwiz_tools/examples/txt2mzml.cpp
 pwiz_tools/examples/write_example_files.cpp
 pwiz_tools/examples/write_mzid_example_files.cpp
 pwiz_tools/examples/write_traml_example_files.cpp
Copyright: 2007, Spielberg Family Center for Applied Proteomics
  2008, Spielberg Family Center for Applied Proteomics
  2009, Spielberg Family Center for Applied Proteomics
  2010, Spielberg Family Center for Applied Proteomics
License: Apache-2.0

Files: pwiz_tools/commandline/idconvert.cpp
 pwiz_tools/examples/write_proteome_example_files.cpp
Copyright: 2010, Vanderbilt University - Nashville, TN 37232
  2011, Vanderbilt University - Nashville, TN 37232
License: Apache-2.0

Files: libraries/eigen3-nnls/*
Copyright: 2013 Hannes Matuschek <hmatuschek at uni-potsdam.de>
License: MPL-2.0
 This Source Code Form is subject to the terms of the Mozilla
 Public License v. 2.0. If a copy of the MPL was not distributed
 with this file, You can obtain one at http://mozilla.org/MPL/2.0/.

Files: debian/*
Copyright: 2012-2017 Filippo Rusconi <lopippo@debian.org>
License: GPL-3+
 This package is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation; either version 3 of the License, or
 (at your option) any later version.
 .
 This package is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.
 .
 You should have received a copy of the GNU General Public License
 along with this program. If not, see <http://www.gnu.org/licenses/>
 .
 On Debian systems, the complete text of the GNU General
 Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".

