//!/usr/bin/env node
//
// 
// @file    printNotes.js
// @brief   prints Notes strings for each element
// @author  Frank T. Bergmann
// 
// <!--------------------------------------------------------------------------
// This sample program is distributed under a different license than the rest
// of libSBML.  This program uses the open-source MIT license, as follows:
//
// Copyright (c) 2013-2017 by the California Institute of Technology
// (California, USA), the European Bioinformatics Institute (EMBL-EBI, UK)
// and the University of Heidelberg (Germany), with support from the National
// Institutes of Health (USA) under grant R01GM070923.  All rights reserved.
//
// Permission is hereby granted, free of charge, to any person obtaining a
// copy of this software and associated documentation files (the "Software"),
// to deal in the Software without restriction, including without limitation
// the rights to use, copy, modify, merge, publish, distribute, sublicense,
// and/or sell copies of the Software, and to permit persons to whom the
// Software is furnished to do so, subject to the following conditions:
//
// The above copyright notice and this permission notice shall be included in
// all copies or substantial portions of the Software.
//
// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
// IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
// FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
// THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
// LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
// FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
// DEALINGS IN THE SOFTWARE.
//
// Neither the name of the California Institute of Technology (Caltech), nor
// of the European Bioinformatics Institute (EMBL-EBI), nor of the University
// of Heidelberg, nor the names of any contributors, may be used to endorse
// or promote products derived from this software without specific prior
// written permission.
// ------------------------------------------------------------------------ -->
// 



var sbml = require('sbml');


function printNotes(sb, id)
{
  id = id || ""
  if (!sb.isSetNotes())
  {
	  return;
  }
  
  var pid = "";
  
  if (sb.isSetId())
  {
      pid = sb.getId()
  }
  console.log("-----  " + sb.getElementName() + " (" + pid + ") Notes -----");
  console.log(sb.getNotesString());
  console.log("");
}


if (process.argv.length != 3)
{
  console.log("Usage: node printNotes.js filename");
  process.exit(1)
}

var filename = process.argv[2];
var document = sbml.readSBML(filename);
  
var errors = document.getNumErrors();
  
console.log( "filename: " + filename );
  
if (errors > 0)
{
  document.printErrors();
  process.exit(errors);
}
  
 
// Model

var m = document.getModel();
printNotes(m);

var elements = m.getListOfAllElements();
for (i = 0; i < elements.getSize(); i++)
{
  var current = elements.get(i);
  printNotes(current);
}

process.exit(errors)
