interfaces.matlab

Module: interfaces.matlab

Inheritance diagram for nipype.interfaces.matlab:

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General matlab interface code

MatlabCommandLine

class nipype.interfaces.matlab.MatlabCommandLine(matlab_cmd=None, **inputs)

Bases: nipype.interfaces.base.CommandLine

Object that sets up Matlab specific tools and interfaces

>>> import nipype.interfaces.matlab as matlab
>>> matlab.MatlabCommandLine().matlab_cmd = "matlab.2009a -nodesktop -nosplash"
>>> mcmd = matlab.MatlabCommandLine()
>>> mcmd.inputs.script_lines = "which('who')"
>>> out = mcmd.run() # doctest: +SKIP

__init__(matlab_cmd=None, **inputs)

initializes interface to matlab (default ‘matlab -nodesktop -nosplash’

aggregate_outputs()

Called to populate outputs

Currently, search for discussion of this on private e-mails between Dav and Satra (ugh!). This needs to get in here!

cmdline

get_input_info()

Provides information about file inputs to copy or link to cwd.

Notes

see spm.Realign.get_input_info

inputs_help()

Parameters:

(all default to None and are unset) :

script_lines : string

matlab_script or function name or matlab code to run

cwd : string

working directory for command

run()

set_matlabcmd(cmd)

reset the base matlab command