Identifier Index

[ A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _ ]

A

abbr() (in Label)	all_label_counts (in MaximalVote)	asstring() (in ConfusionMatrix)
absminDistance() (in mvpa.clfs.distance)	analyzer (in ProxyClassifierSensitivityAnalyzer)	asstring() (in RegressionStatistics)
Absolute() (in mvpa.misc.transformers)	analyzers (in CombinedFeaturewiseDatasetMeasure)	asstring() (in SummaryStatistics)
active (in SetLogger)	anova (in mvpa.measures)	Atlas() (in mvpa.atlases.warehouse)
AdaptiveNormal (in mvpa.clfs.stats)	apply() (in Linear)	atlases (in mvpa)
AdaptiveNullDist (in mvpa.clfs.stats)	apply() (in MNI2Tal_MatthewBrett)	AttributesCollector (in mvpa.misc.state)
AdaptiveRDist (in mvpa.clfs.stats)	apply() (in TransformationBase)	AttributeWithUnique (in mvpa.misc.state)
add() (in SummaryStatistics)	applyMapper() (in Dataset)	AUCErrorFx (in mvpa.misc.errorfx)
add() (in OptionGroups)	applyMapper() (in MetaDataset)	aucs() (in ROCCurve)
add() (in Collection)	args (in mvpa.misc)	autoNullDist() (in mvpa.clfs.stats)
aggregateFeatures() (in mvpa.datasets.miscfx)	array (in mvpa.mappers)
algorithms (in mvpa)	asDescreteTime() (in Event)

B

bad_classifiers (in mvpa.clfs.warehouse)	base (in mvpa.misc.plot)	BinaryClassifier (in mvpa.clfs.base)
base (in mvpa.atlases)	base_sensitivities (in FeaturewiseDatasetMeasure)	blr (in mvpa.clfs)
base (in mvpa)	BaseAtlas (in mvpa.atlases.base)	BLR (in mvpa.clfs.blr)
base (in mvpa.clfs)	BestDetector (in mvpa.featsel.helpers)	BoostedClassifier (in mvpa.clfs.base)
base (in mvpa.datasets)	bestindex (in BestDetector)	BoostedClassifierSensitivityAnalyzer (in mvpa.measures.base)
base (in mvpa.featsel)	bias (in StaticDatasetMeasure)	boxcar (in mvpa.mappers)
base (in mvpa.mappers)	biases (in LinearSVMWeights)	BoxcarMapper (in mvpa.mappers.boxcar)
base (in mvpa.measures)	biases (in LinearSVMWeights)	BrainVoyagerRTC (in mvpa.misc.bv.base)
base (in mvpa.misc.bv)	biases (in LinearSVMWeights)	bv (in mvpa.misc)
base (in mvpa.misc.fsl)	biases (in SMLR)
base (in mvpa.misc.io)	biases (in SMLRWeights)

C

c_darray (in mvpa.clfs.libsmlrc.ctypes_helper)	CollectableAttribute (in mvpa.misc.state)	compute_log_marginal_likelihood() (in GPR)
c_farray (in mvpa.clfs.libsmlrc.ctypes_helper)	Collection (in mvpa.misc.state)	compute_M_H() (in IterativeRelief)
c_iarray (in mvpa.clfs.libsmlrc.ctypes_helper)	ColumnData (in mvpa.misc.io.base)	compute_M_H() (in IterativeRelief_Devel)
c_larray (in mvpa.clfs.libsmlrc.ctypes_helper)	combined_analyzer (in BoostedClassifierSensitivityAnalyzer)	config (in mvpa.base)
cartesianDistance() (in mvpa.clfs.distance)	CombinedClassifier (in mvpa.clfs.base)	ConfigManager (in mvpa.base.config)
cdf() (in AdaptiveRDist)	CombinedFeaturewiseDatasetMeasure (in mvpa.measures.base)	confusion (in CrossValidatedTransferError)
cdf() (in FixedNullDist)	CombinedMapper (in mvpa.mappers.base)	confusion (in SplitClassifier)
cdf() (in MCNullDist)	combiner (in CrossValidatedTransferError)	confusion (in ClassifierError)
cdf() (in Nonparametric)	combiner (in CombinedClassifier)	ConfusionBasedError (in mvpa.clfs.transerror)
cdf() (in NullDist)	commonopts_list (in mvpa.misc.cmdline)	ConfusionMatrix (in mvpa.clfs.transerror)
cfg (in mvpa.base)	compute() (in Kernel)	convergence_tol (in SMLR)
ChainMapper (in mvpa.mappers.base)	compute() (in KernelConstant)	ConvergenceError (in mvpa.misc.exceptions)
channel (in mvpa.datasets)	compute() (in KernelExponential)	convert2SVMNode() (in mvpa.clfs.libsvmc._svm)
ChannelDataset (in mvpa.datasets.channel)	compute() (in KernelLinear)	convertFeatureIds2FeatureMask() (in Dataset)
channelids (in ChannelDataset)	compute() (in KernelMatern_3_2)	convertFeatureMask2FeatureIds() (in Dataset)
channels (in EEPBin)	compute() (in KernelRationalQuadratic)	convertOutIds2InMask() (in MaskMapper)
checkRange() (in mvpa.atlases.base)	compute() (in KernelSquaredExponential)	convertOutIds2OutMask() (in MaskMapper)
chirpLinear() (in mvpa.misc.data_generators)	compute() (in SummaryStatistics)	coord() (in Label)
chisquare() (in mvpa.misc.stats)	compute_gradient() (in Kernel)	coordT (in XMLBasedAtlas)
Classifier (in mvpa.clfs.base)	compute_gradient_log_marginal_likelihood() (in GPR)	copy (in mvpa.misc)
ClassifierCombiner (in mvpa.clfs.base)	compute_gradient_log_marginal_likelihood_logscale() (in GPR)	copy() (in Dataset)
ClassifierError (in mvpa.clfs.transerror)	compute_lml_gradient() (in Kernel)	copy() (in mvpa.misc.copy)
ClassWithCollections (in mvpa.misc.state)	compute_lml_gradient() (in KernelConstant)	corrcoef (in mvpa.measures)
clean() (in MCNullDist)	compute_lml_gradient() (in KernelExponential)	CorrCoef (in mvpa.measures.corrcoef)
clf (in ProxyClassifier)	compute_lml_gradient() (in KernelLinear)	CorrErrorFx (in mvpa.misc.errorfx)
clf (in Sensitivity)	compute_lml_gradient() (in KernelSquaredExponential)	CorrErrorPFx (in mvpa.misc.errorfx)
clf() (in ClassifierError)	compute_lml_gradient_logscale() (in Kernel)	count() (in Label)
clfs (in mvpa)	compute_lml_gradient_logscale() (in KernelConstant)	CrossValidatedTransferError (in mvpa.algorithms.cvtranserror)
clfs (in BoostedClassifier)	compute_lml_gradient_logscale() (in KernelExponential)	ctypes_helper (in mvpa.clfs.libsmlrc)
clfs (in mvpa.clfs.warehouse)	compute_lml_gradient_logscale() (in KernelLinear)	CustomSplitter (in mvpa.datasets.splitter)
cmdline (in mvpa.misc)	compute_lml_gradient_logscale() (in KernelSquaredExponential)	cvtranserror (in mvpa.algorithms)
coarsenChunks() (in mvpa.datasets.miscfx)	compute_log_marginal_likelihood() (in BLR)

D

data (in DataReader)	default (in Parameter)	distance (in mvpa.clfs)
data_generators (in mvpa.misc)	default_backend (in mvpa.clfs.svm)	dochelpers (in mvpa.base)
DataReader (in mvpa.misc.io.base)	default_parameters (in SVMParameter)	doubleArray() (in mvpa.clfs.libsvmc._svm)
Dataset (in mvpa.datasets.base)	defineFeatureGroups() (in Dataset)	doubleArray2List() (in mvpa.clfs.libsvmc._svm)
DatasetAttribute (in mvpa.misc.state)	DenseArrayMapper (in mvpa.mappers.array)	doubleGammaHRF() (in mvpa.misc.fx)
DatasetError (in mvpa.misc.exceptions)	descr (in ClassWithCollections)	dt (in ChannelDataset)
DatasetMeasure (in mvpa.measures.base)	DescreteMetric (in mvpa.mappers.metric)	dt (in EEPBin)
datasetmethod() (in mvpa.datasets.base)	design2labels() (in mvpa.misc.io.base)	dumbFeatureBinaryDataset() (in mvpa.misc.data_generators)
datasets (in mvpa)	detrend() (in mvpa.datasets.miscfx_sp)	dumbFeatureDataset() (in mvpa.misc.data_generators)
datasets (in MetaDataset)	disable() (in StateCollection)	dump() (in Hamster)
debug (in mvpa.base)	discardOut() (in MaskMapper)	durations (in FslEV3)
DebugLogger (in mvpa.base.verbosity)	dist_samples (in MCNullDist)
deepcopy() (in mvpa.misc.copy)	distance (in ReferencesAtlas)

E

eep (in mvpa.datasets)	equalDefault() (in Parameter)	errors (in RFE)
eepbin (in mvpa.misc.io)	ERNiftiDataset (in mvpa.datasets.nifti)	event (in mvpa.datasets)
EEPBin (in mvpa.misc.io.eepbin)	erp (in mvpa.misc.plot)	Event (in mvpa.misc.support)
EEPDataset (in mvpa.datasets.eep)	errLinePlot() (in mvpa.misc.plot.base)	EventDataset (in mvpa.datasets.event)
ElementSelector (in mvpa.featsel.helpers)	Error (in mvpa.misc.copy)	exceptions (in mvpa.misc)
elementsize (in DescreteMetric)	error() (in ConfusionMatrix)	exists() (in mvpa.base.externals)
enable() (in StateCollection)	error() (in RegressionStatistics)	extend_args() (in mvpa.clfs.libsmlrc.ctypes_helper)
enable() (in StateVariable)	error() (in SummaryStatistics)	extent (in XMLBasedAtlas)
enabled (in StateCollection)	errorfx (in mvpa.misc)	externals (in mvpa.base)
enhancedClassDocString() (in mvpa.base.dochelpers)	errorfx() (in TransferError)
enhancedDocString() (in mvpa.base.dochelpers)	errors (in IFS)

F

featsel (in mvpa)	fit() (in MCNullDist)	forward() (in SampleGroupMapper)
feature_ids (in Classifier)	fit() (in Nonparametric)	forward() (in _WaveletMapper)
feature_ids() (in Sensitivity)	fit() (in NullDist)	FractionTailSelector (in mvpa.featsel.helpers)
feature_selection (in FeatureSelectionClassifier)	fit() (in rv_semifrozen)	freeDoubleArray() (in mvpa.clfs.libsvmc._svm)
feature_selections (in FeatureSelectionPipeline)	fit_all_weights (in SMLR)	freeIntArray() (in mvpa.clfs.libsvmc._svm)
FeatureAttribute (in mvpa.misc.state)	FixedErrorThresholdStopCrit (in mvpa.featsel.helpers)	fsl (in mvpa.atlases)
FeatureSelection (in mvpa.featsel.base)	FixedNElementTailSelector (in mvpa.featsel.helpers)	fsl (in mvpa.misc)
FeatureSelectionClassifier (in mvpa.clfs.base)	FixedNullDist (in mvpa.clfs.stats)	FSLAtlas (in mvpa.atlases.fsl)
FeatureSelectionPipeline (in mvpa.featsel.base)	flobs (in mvpa.misc.fsl)	FslEV3 (in mvpa.misc.fsl.base)
FeaturewiseDatasetMeasure (in mvpa.measures.base)	forward() (in ChainMapper)	FSLLabelsAtlas (in mvpa.atlases.fsl)
felements (in FractionTailSelector)	forward() (in CombinedMapper)	FSLProbabilisticAtlas (in mvpa.atlases.fsl)
filter_coord (in DescreteMetric)	forward() (in Mapper)	funcdata (in MelodicResults)
FirstAxisMean() (in mvpa.misc.transformers)	forward() (in ProjectionMapper)	fx (in mvpa.misc)
fit() (in AdaptiveNullDist)	forward() (in BoxcarMapper)
fit() (in FixedNullDist)	forward() (in MaskMapper)

G

generateFromXML() (in Label)	getNeighbor() (in ChainMapper)	getRho() (in SVMModel)
generateFromXML() (in LabelsLevel)	getNeighbor() (in CombinedMapper)	getSamplesPerChunkLabel() (in mvpa.datasets.miscfx)
generateFromXML() (in Level)	getNeighbor() (in Mapper)	getSensitivityAnalyzer() (in _SVM)
generateFromXML() (in ReferencesLevel)	getNeighbor() (in Metric)	getSensitivityAnalyzer() (in BoostedClassifier)
get() (in ConfigManager)	getNeighborIn() (in Mapper)	getSensitivityAnalyzer() (in Classifier)
get() (in Collection)	getNeighbors() (in Mapper)	getSensitivityAnalyzer() (in FeatureSelectionClassifier)
get_argtypes() (in mvpa.clfs.libsmlrc.ctypes_helper)	getNeighbors() (in DescreteMetric)	getSensitivityAnalyzer() (in MappedClassifier)
getAsDType() (in ConfigManager)	getNeighbors() (in Metric)	getSensitivityAnalyzer() (in ProxyClassifier)
getboolean() (in ConfigManager)	getNEVs() (in FslEV3)	getSensitivityAnalyzer() (in SplitClassifier)
getBreakPoints() (in mvpa.misc.support)	getNFeatures() (in Dataset)	getSensitivityAnalyzer() (in GPR)
getData() (in DataReader)	getNFeatures() (in MetaDataset)	getSensitivityAnalyzer() (in LARS)
getEV() (in FslEV3)	getNiftiData() (in mvpa.datasets.nifti)	getSensitivityAnalyzer() (in SMLR)
getInId() (in Mapper)	getNiftiFromAnySource() (in mvpa.datasets.nifti)	getSV() (in SVMModel)
getInId() (in MaskMapper)	getNRClass() (in SVMModel)	getSVCoef() (in SVMModel)
getInIds() (in MaskMapper)	getNRows() (in ColumnData)	getSVRPdf() (in SVMModel)
getInSize() (in ChainMapper)	getNSamples() (in Dataset)	getSVRProbability() (in SVMModel)
getInSize() (in CombinedMapper)	getNSamples() (in MetaDataset)	getTotalNSV() (in SVMModel)
getInSize() (in Mapper)	getNSamples() (in SampleAttributes)	getUniqueLengthNCombinations() (in mvpa.misc.support)
getInSize() (in ProjectionMapper)	getNSV() (in SVMModel)	getvalue() (in Collection)
getInSize() (in BoxcarMapper)	getOutId() (in MaskMapper)	getWeightedVote() (in kNN)
getInSize() (in MaskMapper)	getOutSize() (in ChainMapper)	gpr (in mvpa.clfs)
getInSize() (in SampleGroupMapper)	getOutSize() (in CombinedMapper)	GPR (in mvpa.clfs.gpr)
getInSize() (in _WaveletMapper)	getOutSize() (in Mapper)	GPRLinearWeights (in mvpa.clfs.gpr)
getLabels() (in SVMModel)	getOutSize() (in ProjectionMapper)	GPRWeights (in mvpa.clfs.gpr)
getLabels_map() (in ConfusionMatrix)	getOutSize() (in BoxcarMapper)	gradient() (in KernelExponential)
getLabelsMap() (in Dataset)	getOutSize() (in MaskMapper)	gradient() (in KernelMatern_3_2)
getMajorityVote() (in kNN)	getOutSize() (in SampleGroupMapper)	gradient() (in KernelRationalQuadratic)
getMask() (in MaskMapper)	getOutSize() (in _WaveletMapper)	GrandMean() (in mvpa.misc.transformers)
getMetric() (in Mapper)	getPropsAsDict() (in DataReader)	group_kwargs() (in mvpa.misc.args)
getMVPattern() (in mvpa.misc.data_generators)	getRandomSamples() (in Dataset)
getNColumns() (in ColumnData)	getRandomSamples() (in MetaDataset)

H

HalfSplitter (in mvpa.datasets.splitter)	harvest_attribs (in Harvestable)	has_bias (in SMLR)
hamster (in mvpa.misc.io)	Harvestable (in mvpa.misc.state)	hasunique (in AttributeWithUnique)
Hamster (in mvpa.misc.io.hamster)	harvested (in Harvestable)	header_def (in McFlirtParams)
handleDocString() (in mvpa.base.dochelpers)	Harvester (in mvpa.misc.support)	helpers (in mvpa.featsel)
handlers (in Logger)	HarvesterCall (in mvpa.misc.support)

I

ic (in MelodicResults)	indexes() (in ReferencesLevel)	isSet() (in Collection)
ica (in mvpa.mappers)	intArray() (in mvpa.clfs.libsvmc._svm)	isSorted() (in mvpa.misc.support)
ICAMapper (in mvpa.mappers.ica)	intArray2List() (in mvpa.clfs.libsvmc._svm)	isTrained() (in Classifier)
icastats (in MelodicResults)	intensities (in FslEV3)	isValidInId() (in Mapper)
Identity() (in mvpa.misc.transformers)	internals() (in Warehouse)	isValidInId() (in BoxcarMapper)
idhash() (in Dataset)	InvalidHyperparameterError (in mvpa.misc.exceptions)	isValidInId() (in MaskMapper)
idhash() (in mvpa.misc.support)	inverseCmap() (in mvpa.misc.plot.base)	isValidOutId() (in Mapper)
idsonboundaries() (in Dataset)	io (in mvpa.misc)	isValidOutId() (in BoxcarMapper)
ifs (in mvpa.featsel)	irelief (in mvpa.measures)	items (in Collection)
IFS (in mvpa.featsel.ifs)	isActive() (in StateCollection)	items() (in Warehouse)
implementation (in SMLR)	isDefault() (in Parameter)	IterativeRelief (in mvpa.measures.irelief)
indent (in LevelLogger)	isEnabled() (in StateCollection)	IterativeRelief_Devel (in mvpa.measures.irelief)
indentDoc() (in mvpa.misc.support)	isEnabled() (in StateVariable)	IterativeReliefOnline (in mvpa.measures.irelief)
index() (in Label)	isInVolume() (in mvpa.misc.support)	IterativeReliefOnline_Devel (in mvpa.measures.irelief)
index() (in LabelsLevel)	isKnown() (in Collection)
index() (in Dataset)	isSet() (in CollectableAttribute)

K

k() (in IterativeRelief)	KernelExponential (in mvpa.clfs.kernel)	KernelSquaredExponential (in mvpa.clfs.kernel)
kernel (in GPR)	KernelLinear (in mvpa.clfs.kernel)	knn (in mvpa.clfs)
kernel (in mvpa.clfs)	KernelMatern_3_2 (in mvpa.clfs.kernel)	kNN (in mvpa.clfs.knn)
Kernel (in mvpa.clfs.kernel)	KernelMatern_5_2 (in mvpa.clfs.kernel)	KNOWN_ATLAS_FAMILIES (in mvpa.atlases.warehouse)
kernel_dictionary (in mvpa.clfs.kernel)	KernelParameter (in mvpa.misc.param)	KNOWN_ATLASES (in mvpa.atlases.warehouse)
KernelConstant (in mvpa.clfs.kernel)	KernelRationalQuadratic (in mvpa.clfs.kernel)	known_models (in mvpa.clfs.lars)

L

L1Normed() (in mvpa.misc.transformers)	LARS (in mvpa.clfs.lars)	LinearNuSVMC (in mvpa.clfs.svm)
L2Normed() (in mvpa.misc.transformers)	LARSWeights (in mvpa.clfs.lars)	linearSVMC (in mvpa.clfs.warehouse)
Label (in mvpa.atlases.base)	leastSqFit() (in mvpa.misc.fx)	LinearSVMWeights (in mvpa.clfs.libsvmc.sens)
labelPoint() (in XMLBasedAtlas)	Level (in mvpa.atlases.base)	LinearSVMWeights (in mvpa.clfs.libsvmc.svm)
labels() (in LabelsLevel)	level (in LevelLogger)	LinearSVMWeights (in mvpa.clfs.sg.sens)
labels() (in ClassifierError)	LevelLogger (in mvpa.base.verbosity)	listing (in Collection)
labels() (in ConfusionMatrix)	levels_dict (in XMLBasedAtlas)	listing() (in Warehouse)
labels2chunks() (in mvpa.misc.io.base)	levelsListing() (in ReferencesAtlas)	lm (in SMLR)
labels_map (in ConfusionMatrix)	levelsListing() (in XMLBasedAtlas)	loadAtlas() (in XMLBasedAtlas)
labels_map (in Dataset)	levelType (in Level)	locations() (in SensorLocations)
LabelsAtlas (in mvpa.atlases.base)	lfprev (in Logger)	log_marginal_likelihood (in BLR)
LabelsLevel (in mvpa.atlases.base)	libsmlrc (in mvpa.clfs)	log_marginal_likelihood (in GPR)
labelVoxel() (in LabelsAtlas)	libsvmc (in mvpa.clfs)	log_marginal_likelihood_gradient (in GPR)
labelVoxel() (in ReferencesAtlas)	Linear (in mvpa.atlases.transformation)	Logger (in mvpa.base.verbosity)
labelVoxel() (in FSLProbabilisticAtlas)	linear_awgn() (in mvpa.misc.data_generators)
lars (in mvpa.clfs)	LinearCSVMC (in mvpa.clfs.svm)

M

mahalanobisDistance() (in mvpa.clfs.distance)	MaskedDataset (in mvpa.datasets.masked)	metric (in mvpa.mappers)
makeFlobs() (in mvpa.misc.fsl.flobs)	MaskMapper (in mvpa.mappers.mask)	Metric (in mvpa.mappers.metric)
manhattenDistance() (in mvpa.clfs.distance)	matchDistribution() (in mvpa.clfs.stats)	metrics (in DebugLogger)
map2Nifti() (in ERNiftiDataset)	matrices() (in ConfusionMatrix)	min_resamp (in SMLR)
map2Nifti() (in NiftiDataset)	matrix() (in ConfusionMatrix)	misc (in mvpa)
mapForward() (in MappedDataset)	max_log_marginal_likelihood() (in ModelSelector)	miscfx (in mvpa.datasets)
MapOverlap (in mvpa.misc.support)	maxcount (in WarningLog)	miscfx_sp (in mvpa.datasets)
mapped (in mvpa.datasets)	MaximalVote (in mvpa.clfs.base)	MNI2Tal_Lancaster07FSL() (in mvpa.atlases.transformation)
MappedClassifier (in mvpa.clfs.base)	maxiter (in SMLR)	MNI2Tal_Lancaster07pooled() (in mvpa.atlases.transformation)
MappedClassifierSensitivityAnalyzer (in mvpa.measures.base)	mbasename() (in mvpa.base.verbosity)	MNI2Tal_MatthewBrett (in mvpa.atlases.transformation)
MappedDataset (in mvpa.datasets.mapped)	McFlirtParams (in mvpa.misc.fsl.base)	MNI2Tal_MeyerLindenberg98() (in mvpa.atlases.transformation)
mapper (in MappedClassifier)	MCNullDist (in mvpa.clfs.stats)	MNI2Tal_YOHflirt() (in mvpa.atlases.transformation)
mapper (in MappedDataset)	MeanMismatchErrorFx (in mvpa.misc.errorfx)	mode (in ElementSelector)
Mapper (in mvpa.mappers.base)	meanPowerFx() (in mvpa.misc.errorfx)	model (in SVM)
mappers (in mvpa)	MeanPrediction (in mvpa.clfs.base)	model_selector (in mvpa.clfs)
mapReverse() (in MappedDataset)	measures (in mvpa)	ModelSelector (in mvpa.clfs.model_selector)
mapReverse() (in MetaDataset)	meg (in mvpa.misc.io)	MulticlassClassifier (in mvpa.clfs.base)
mapSelfReverse() (in MappedDataset)	melodic (in mvpa.misc.fsl)	multipleChunks() (in mvpa.misc.data_generators)
mask (in mvpa.mappers)	MelodicResults (in mvpa.misc.fsl.melodic)	MultiStopCrit (in mvpa.featsel.helpers)
mask (in MaskMapper)	meta (in mvpa.datasets)	mvpa
maskclf (in FeatureSelectionClassifier)	MetaDataset (in mvpa.datasets.meta)
masked (in mvpa.datasets)	metric (in Mapper)

N

name (in CollectableAttribute)	nic (in MelodicResults)	normalFeatureDataset() (in mvpa.misc.data_generators)
name (in Collection)	nifti (in mvpa.datasets)	normalFeatureDataset__() (in mvpa.misc.data_generators)
names (in Collection)	NiftiDataset (in mvpa.datasets.nifti)	nrows (in ColumnData)
nanmean() (in mvpa.clfs.stats)	niftihdr (in ERNiftiDataset)	nsamples (in Dataset)
NBackHistoryStopCrit (in mvpa.featsel.helpers)	niftihdr (in NiftiDataset)	nsamples (in MetaDataset)
nchannels (in EEPBin)	NLAcholesky (in mvpa.clfs.gpr)	nsamples (in SampleAttributes)
ncolumns (in ColumnData)	NLAError (in mvpa.clfs.gpr)	nsamples (in EEPBin)
Ndiag (in mvpa.clfs.gpr)	NLAsolve (in mvpa.clfs.gpr)	NStepsStopCrit (in mvpa.featsel.helpers)
ndiscarded (in ElementSelector)	Nlevels (in PyMVPAAtlas)	ntimepoints (in EEPBin)
Ndot (in mvpa.clfs.gpr)	Nlog (in mvpa.clfs.gpr)	null_dist() (in TransferError)
nelements (in FixedNElementTailSelector)	nnlf() (in rv_semifrozen)	null_dist() (in DatasetMeasure)
nevs (in FslEV3)	noiseperturbation (in mvpa.measures)	null_prob (in TransferError)
nfeatures (in Dataset)	NoisePerturbationSensitivity (in mvpa.measures.noiseperturbation)	null_prob (in DatasetMeasure)
nfeatures (in MetaDataset)	noisy_2d_fx() (in mvpa.misc.data_generators)	null_t (in DatasetMeasure)
nfeatures (in Mapper)	NoneSplitter (in mvpa.datasets.splitter)	NullDist (in mvpa.clfs.stats)
NFoldSplitter (in mvpa.datasets.splitter)	Nonparametric (in mvpa.clfs.stats)	num_threads (in SVM)

O

O (in MappedDataset)	OneWayAnova (in mvpa.measures.anova)	opts (in mvpa.misc.cmdline)
OddEvenSplitter (in mvpa.datasets.splitter)	onsets (in FslEV3)	origin (in XMLBasedAtlas)
offsetbydepth (in DebugLogger)	opt (in mvpa.misc.cmdline)	OverAxis (in mvpa.misc.transformers)
oldname (in mvpa.datasets.nifti)	optDebug (in mvpa.misc.cmdline)	owner (in Collection)
OnceLogger (in mvpa.base.verbosity)	OptionGroups (in mvpa.misc.cmdline)
OneMinus() (in mvpa.misc.transformers)	Options (in mvpa.misc.cmdline)

P

p() (in NullDist)	plotDistributionMatches() (in mvpa.clfs.stats)	predictions (in MaximalVote)
param (in mvpa.misc)	plotERP() (in mvpa.misc.plot.erp)	predictions (in MeanPrediction)
param() (in SVMParameter)	plotERPs() (in mvpa.misc.plot.erp)	PredictionsCombiner (in mvpa.clfs.base)
Parameter (in mvpa.misc.param)	plotFeatureHist() (in mvpa.misc.plot.base)	predictProbability() (in SVMModel)
ParameterCollection (in mvpa.misc.state)	plotHeadOutline() (in mvpa.misc.plot.topo)	predictValues() (in SVMModel)
parser (in mvpa.misc.cmdline)	plotHeadTopography() (in mvpa.misc.plot.topo)	predictValuesRaw() (in SVMModel)
parseStatus() (in mvpa.base.verbosity)	plotSamplesDistance() (in mvpa.misc.plot.base)	printsetid (in SetLogger)
path (in MelodicResults)	plr (in mvpa.clfs)	probabilities (in SVM)
pca (in mvpa.mappers)	PLR (in mvpa.clfs.plr)	process_args() (in mvpa.clfs.libsmlrc.ctypes_helper)
PCAMapper (in mvpa.mappers.pca)	pls (in mvpa.measures)	proj (in ProjectionMapper)
percentCorrect() (in ConfusionMatrix)	PLS (in mvpa.measures.pls)	ProjectionMapper (in mvpa.mappers.base)
permuteLabels() (in Dataset)	pnorm_w_python() (in mvpa.clfs.distance)	props (in DataReader)
permuteLabels() (in MetaDataset)	predict() (in Classifier)	ProxyClassifier (in mvpa.clfs.base)
plot (in mvpa.misc)	predict() (in SVMModel)	ProxyClassifierSensitivityAnalyzer (in mvpa.measures.base)
plot() (in ConfusionMatrix)	predicted_variances (in BLR)	pureMultivariateSignal() (in mvpa.misc.data_generators)
plot() (in ROCCurve)	predicted_variances (in GPR)	pymvpa_version (in mvpa)
plot() (in McFlirtParams)	predicting_time (in Classifier)	PyMVPAAtlas (in mvpa.atlases.base)
plotBars() (in mvpa.misc.plot.base)	predictions (in Classifier)	PyStringMap (in mvpa.misc.copy)
plotDatasetChunks() (in mvpa.misc.plot.base)	predictions (in ClassifierCombiner)

R

RangeElementSelector (in mvpa.featsel.helpers)	remove() (in Collection)	reverse() (in Mapper)
RankOrder() (in mvpa.misc.transformers)	removeInvariantFeatures() (in mvpa.datasets.miscfx)	reverse() (in ProjectionMapper)
raw_predictions (in BoostedClassifier)	repredict() (in Classifier)	reverse() (in BoxcarMapper)
raw_result (in DatasetMeasure)	resamp_decay (in SMLR)	reverse() (in MaskMapper)
raw_values (in BoostedClassifier)	resample() (in ChannelDataset)	reverse() (in SampleGroupMapper)
RbfCSVMC (in mvpa.clfs.svm)	reset() (in Kernel)	reverse() (in _WaveletMapper)
RbfNuSVMC (in mvpa.clfs.svm)	reset() (in KernelLinear)	ReverseRankOrder() (in mvpa.misc.transformers)
rebuildSamples() (in MetaDataset)	reset() (in KernelSquaredExponential)	rfe (in mvpa.featsel)
recon (in ProjectionMapper)	reset() (in SummaryStatistics)	RFE (in mvpa.featsel.rfe)
ReferencesAtlas (in mvpa.atlases.base)	reset() (in AttributeWithUnique)	RFEHistory2maps() (in mvpa.misc.support)
ReferencesLevel (in mvpa.atlases.base)	reset() (in ClassWithCollections)	rfesvm (in mvpa.clfs.warehouse)
register() (in SetLogger)	reset() (in CollectableAttribute)	rfesvm_split (in mvpa.clfs.warehouse)
registered (in SetLogger)	reset() (in Collection)	ridge (in mvpa.clfs)
registerMetric() (in DebugLogger)	reset() (in StateVariable)	RidgeReg (in mvpa.clfs.ridge)
regression (in Classifier)	resetvalue() (in Parameter)	RMSErrorFx (in mvpa.misc.errorfx)
RegressionStatistics (in mvpa.clfs.transerror)	resetvalue() (in ParameterCollection)	ROCCurve (in mvpa.clfs.transerror)
regrs (in mvpa.clfs.warehouse)	retrain() (in Classifier)	ROCs() (in ROCCurve)
RelativeRMSErrorFx (in mvpa.misc.errorfx)	retrainable (in Classifier)	rootMeanPowerFx() (in mvpa.misc.errorfx)
RelativeTime (in mvpa.base.verbosity)	reuseAbsolutePath() (in mvpa.misc.support)	rstUnderline() (in mvpa.base.dochelpers)
reload() (in ConfigManager)	reverse() (in ChainMapper)	rv_semifrozen (in mvpa.clfs.stats)
relvar_per_ic (in MelodicResults)	reverse() (in CombinedMapper)

S

SampleAttribute (in mvpa.misc.state)	set_hyperparameters() (in BLR)	SplitFeaturewiseMeasure (in mvpa.measures.splitmeasure)
SampleAttributes (in mvpa.misc.io.base)	set_hyperparameters() (in GPR)	splitmeasure (in mvpa.measures)
SampleAttributesCollection (in mvpa.misc.state)	set_hyperparameters() (in KernelConstant)	splits (in CrossValidatedTransferError)
samplegroup (in mvpa.mappers)	set_hyperparameters() (in KernelExponential)	splits (in SplitClassifier)
SampleGroupMapper (in mvpa.mappers.samplegroup)	set_hyperparameters() (in KernelLinear)	splitter (in CrossValidatedTransferError)
samples_error (in CrossValidatedTransferError)	set_hyperparameters() (in KernelMatern_3_2)	splitter (in SplitClassifier)
samples_error (in TransferError)	set_hyperparameters() (in KernelRationalQuadratic)	splitter (in mvpa.datasets)
samples_original (in MappedDataset)	set_hyperparameters() (in KernelSquaredExponential)	Splitter (in mvpa.datasets.splitter)
samplingrate (in ChannelDataset)	setActiveFromString() (in SetLogger)	squared_euclidean_distance() (in mvpa.clfs.distance)
save() (in ConfigManager)	setCoordT() (in XMLBasedAtlas)	state (in mvpa.misc)
save() (in SVMModel)	setDefault() (in Parameter)	StateCollection (in mvpa.misc.state)
searchlight (in mvpa.measures)	setDistance() (in ReferencesAtlas)	StateVariable (in mvpa.misc.state)
Searchlight (in mvpa.measures.searchlight)	setLabels_map() (in ConfusionMatrix)	StaticDatasetMeasure (in mvpa.measures.base)
SecondAxisMaxOfAbs() (in mvpa.misc.transformers)	setLabelsMap() (in Dataset)	stats (in mvpa.clfs)
SecondAxisMean() (in mvpa.misc.transformers)	SetLogger (in mvpa.base.verbosity)	stats (in mvpa.misc)
SecondAxisSumOfAbs() (in mvpa.misc.transformers)	setMetric() (in Mapper)	stats() (in SummaryStatistics)
seed (in SMLR)	setNPerLabel() (in Splitter)	steps (in NBackHistoryStopCrit)
seed() (in mvpa)	setReferenceLevel() (in ReferencesAtlas)	steps (in NStepsStopCrit)
select() (in Dataset)	sets (in SummaryStatistics)	stepwise_regression() (in mvpa.clfs.libsmlrc)
selected_ids (in FeatureSelection)	setSamplesDType() (in Dataset)	StoppingCriterion (in mvpa.featsel.helpers)
selectFeatures() (in Dataset)	setSamplesDType() (in MetaDataset)	strategy (in Splitter)
selectFeatures() (in MappedDataset)	setTestDataset() (in FeatureSelectionClassifier)	substractBaseline() (in ChannelDataset)
selectFeatures() (in MetaDataset)	setvalue() (in Collection)	suite (in mvpa)
selectFeaturesByMask() (in MaskedDataset)	sg (in mvpa.clfs)	summaries() (in SummaryStatistics)
selectOut() (in ChainMapper)	sigma_noise (in GPR)	summary() (in Classifier)
selectOut() (in CombinedMapper)	singleGammaHRF() (in mvpa.misc.fx)	summary() (in CombinedClassifier)
selectOut() (in Mapper)	sinModulated() (in mvpa.misc.data_generators)	summary() (in ProxyClassifier)
selectOut() (in ProjectionMapper)	SLAError (in mvpa.clfs.gpr)	summary() (in SVM)
selectOut() (in BoxcarMapper)	smlr (in mvpa.clfs)	summary() (in Dataset)
selectOut() (in MaskMapper)	SMLR (in mvpa.clfs.smlr)	summary_labels() (in Dataset)
selectOut() (in SampleGroupMapper)	smlrlib (in mvpa.clfs.libsmlrc)	SummaryStatistics (in mvpa.clfs.transerror)
selectOut() (in SVDMapper)	SMLRWeights (in mvpa.clfs.smlr)	support (in mvpa.misc)
selectOut() (in _WaveletMapper)	smodes (in MelodicResults)	sv (in SVDMapper)
selectSamples() (in Dataset)	solve() (in ModelSelector)	svd (in mvpa.mappers)
selectSamples() (in MetaDataset)	source (in PyMVPAAtlas)	SVDMapper (in mvpa.mappers.svd)
selectSamples() (in ColumnData)	source (in FSLAtlas)	svm (in mvpa.clfs.libsvmc)
sens (in mvpa.clfs.libsvmc)	space (in PyMVPAAtlas)	SVM (in mvpa.clfs.libsvmc.svm)
sens (in mvpa.clfs.sg)	spaceFlavor (in PyMVPAAtlas)	svm (in mvpa.clfs.sg)
sensitivities (in RFE)	spaceT (in XMLBasedAtlas)	SVM (in mvpa.clfs.sg.svm)
sensitivities (in CombinedFeaturewiseDatasetMeasure)	SpaceTransformation (in mvpa.atlases.transformation)	svm (in SVM)
sensitivity (in SensitivityBasedFeatureSelection)	spheresizes (in Searchlight)	svm (in mvpa.clfs)
Sensitivity (in mvpa.measures.base)	split_kwargs() (in mvpa.misc.args)	SVM (in mvpa.clfs.svm)
sensitivity_analyzer (in SensitivityBasedFeatureSelection)	splitcfg() (in Splitter)	SVMModel (in mvpa.clfs.libsvmc._svm)
SensitivityBasedFeatureSelection (in mvpa.featsel.base)	SplitClassifier (in mvpa.clfs.base)	SVMParameter (in mvpa.clfs.libsvmc._svm)
SensorLocations (in mvpa.misc.io.base)	splitDataset() (in Splitter)	SVMProblem (in mvpa.clfs.libsvmc._svm)

T

t0 (in ChannelDataset)	tofile() (in McFlirtParams)	trained_labels (in Classifier)
t0 (in EEPBin)	tofile() (in ColumnData)	training_confusion (in CrossValidatedTransferError)
table2string() (in mvpa.base.dochelpers)	tofile() (in SampleAttributes)	training_confusion (in Classifier)
tail (in NullDist)	topo (in mvpa.misc.plot)	training_confusion (in ClassifierError)
TailSelector (in mvpa.featsel.helpers)	toRealSpace() (in SpaceTransformation)	training_time (in Classifier)
Tal2MNI_Lancaster07FSL() (in mvpa.atlases.transformation)	toVoxelSpace() (in SpaceTransformation)	transerror (in CrossValidatedTransferError)
Tal2MNI_Lancaster07pooled() (in mvpa.atlases.transformation)	tr (in MelodicResults)	transerror (in mvpa.clfs)
Tal2MNI_YOHflirt() (in mvpa.atlases.transformation)	TraceBack (in mvpa.base.verbosity)	transerrors (in CrossValidatedTransferError)
TaskPLS (in mvpa.measures.pls)	train() (in Classifier)	TransferError (in mvpa.clfs.transerror)
testAllDependencies() (in mvpa.base.externals)	train() (in PredictionsCombiner)	transformation (in mvpa.atlases)
testdataset (in FeatureSelectionClassifier)	train() (in ChainMapper)	TransformationBase (in mvpa.atlases.transformation)
text() (in Label)	train() (in CombinedMapper)	transformers (in mvpa.misc)
threshold (in FixedErrorThresholdStopCrit)	train() (in Mapper)	transformWithBoxcar() (in mvpa.misc.support)
tmodes (in MelodicResults)	train() (in ProjectionMapper)	truevar_per_ic (in MelodicResults)
toarray() (in BrainVoyagerRTC)	train() (in SampleGroupMapper)	TuebingenMEG (in mvpa.misc.io.meg)
toarray() (in McFlirtParams)	traindataset (in SVM)	TuebingenMEGSensorLocations (in mvpa.misc.io.base)
toEvents() (in FslEV3)	trained() (in Classifier)	typemap (in mvpa.clfs.libsmlrc.ctypes_helper)
tofile() (in FslEV3)	trained_dataset (in Classifier)	TypeProxy (in mvpa.atlases.transformation)

U

uniqueValues (in AttributeWithUnique)	untrain() (in CombinedClassifier)	untrain() (in SVMParameter)
UnknownStateError (in mvpa.misc.exceptions)	untrain() (in FeatureSelectionClassifier)	untrain() (in SVM)
untrain() (in BoostedClassifier)	untrain() (in ProxyClassifier)	untrain() (in SVM)
untrain() (in Classifier)	untrain() (in GPR)
untrain() (in ClassifierCombiner)	untrain() (in kNN)

V

value (in Parameter)	Variance1SVFx (in mvpa.misc.errorfx)	version() (in XMLBasedAtlas)
value (in CollectableAttribute)	variances (in GPRLinearWeights)	voxdim (in XMLBasedAtlas)
values (in Classifier)	verbose (in mvpa.base)	vproperty (in mvpa.misc)
var (in PCAMapper)	verbosity (in mvpa.base)	VProperty (in mvpa.misc.vproperty)

W

warehouse (in mvpa.atlases)	warnings_btlevels (in mvpa.base)	weights (in SMLR)
warehouse (in mvpa.clfs)	warnings_maxcount (in mvpa.base)	where() (in Dataset)
Warehouse (in mvpa.clfs.warehouse)	wavelet (in mvpa.mappers)	whichSet() (in Collection)
warning (in mvpa.base)	WaveletPacketMapper (in mvpa.mappers.wavelet)	wr1996() (in mvpa.misc.data_generators)
WarningLog (in mvpa.base)	WaveletTransformationMapper (in mvpa.mappers.wavelet)
warnings_bt (in mvpa.base)	weights (in LARS)

X

XAVRSensorLocations (in mvpa.misc.io.base)	XMLAtlasException (in mvpa.atlases.base)	XMLBasedAtlas (in mvpa.atlases.base)

Z

zscore() (in mvpa.datasets.miscfx)

_

__add__() (in SummaryStatistics)	__init__() (in ChainMapper)	_deepcopy_atomic() (in mvpa.misc.copy)
__add__() (in Dataset)	__init__() (in CombinedMapper)	_deepcopy_dict() (in mvpa.misc.copy)
__call__() (in TransformationBase)	__init__() (in Mapper)	_deepcopy_dispatch (in mvpa.misc.copy)
__call__() (in TypeProxy)	__init__() (in ProjectionMapper)	_deepcopy_inst() (in mvpa.misc.copy)
__call__() (in WarningLog)	__init__() (in BoxcarMapper)	_deepcopy_list() (in mvpa.misc.copy)
__call__() (in _SingletonType)	__init__() (in ICAMapper)	_deepcopy_tuple() (in mvpa.misc.copy)
__call__() (in __Singleton)	__init__() (in MaskMapper)	_deepcopyclf() (in mvpa.clfs.base)
__call__() (in DebugLogger)	__init__() (in DescreteMetric)	_DEFAULT_IMPLEMENTATION (in mvpa.clfs.smlr)
__call__() (in LevelLogger)	__init__() (in PCAMapper)	_defaultC (in mvpa.clfs.svm)
__call__() (in Logger)	__init__() (in SampleGroupMapper)	_defaultNu (in mvpa.clfs.svm)
__call__() (in OnceLogger)	__init__() (in SVDMapper)	_DEFAULTS (in ConfigManager)
__call__() (in RelativeTime)	__init__() (in _WaveletMapper)	_DEV__doc__ (in Classifier)
__call__() (in SetLogger)	__init__() (in OneWayAnova)	_DEV__DOC__ (in mvpa.clfs.kernel)
__call__() (in TraceBack)	__init__() (in BoostedClassifierSensitivityAnalyzer)	_DEV__doc__ (in mvpa.clfs.sg.svm)
__call__() (in ClassifierCombiner)	__init__() (in CombinedFeaturewiseDatasetMeasure)	_DEV__doc__ (in ClassWithCollections)
__call__() (in MaximalVote)	__init__() (in DatasetMeasure)	_DEV_DOC (in MCNullDist)
__call__() (in MeanPrediction)	__init__() (in FeaturewiseDatasetMeasure)	_EmptyClass (in mvpa.misc.copy)
__call__() (in PredictionsCombiner)	__init__() (in ProxyClassifierSensitivityAnalyzer)	_ErrorFx (in mvpa.misc.errorfx)
__call__() (in ClassifierError)	__init__() (in Sensitivity)	_expandSampleAttribute() (in Dataset)
__call__() (in Splitter)	__init__() (in StaticDatasetMeasure)	_forward() (in WaveletPacketMapper)
__call__() (in FeatureSelection)	__init__() (in CorrCoef)	_forward() (in WaveletTransformationMapper)
__call__() (in FeatureSelectionPipeline)	__init__() (in IterativeRelief)	_forward() (in _WaveletMapper)
__call__() (in SensitivityBasedFeatureSelection)	__init__() (in IterativeReliefOnline)	_fromFile() (in ColumnData)
__call__() (in BestDetector)	__init__() (in IterativeReliefOnline_Devel)	_get() (in CollectableAttribute)
__call__() (in ElementSelector)	__init__() (in IterativeRelief_Devel)	_get() (in StateVariable)
__call__() (in FixedErrorThresholdStopCrit)	__init__() (in NoisePerturbationSensitivity)	_getAttrib() (in ColumnData)
__call__() (in MultiStopCrit)	__init__() (in PLS)	_getDefaultC() (in _SVM)
__call__() (in NBackHistoryStopCrit)	__init__() (in Searchlight)	_getDefaultGamma() (in _SVM)
__call__() (in NStepsStopCrit)	__init__() (in SplitFeaturewiseMeasure)	_getEnabled() (in StateCollection)
__call__() (in RangeElementSelector)	__init__() (in BrainVoyagerRTC)	_getFeatureIds() (in BoostedClassifier)
__call__() (in StoppingCriterion)	__init__() (in OptionGroups)	_getFeatureIds() (in Classifier)
__call__() (in TailSelector)	__init__() (in ConvergenceError)	_getFeatureIds() (in FeatureSelectionClassifier)
__call__() (in IFS)	__init__() (in DatasetError)	_getFeatureIds() (in SMLR)
__call__() (in RFE)	__init__() (in InvalidHyperparameterError)	_getFilter() (in DescreteMetric)
__call__() (in Mapper)	__init__() (in UnknownStateError)	_getGroup() (in OptionGroups)
__call__() (in DatasetMeasure)	__init__() (in FslEV3)	_getHandlers() (in Logger)
__call__() (in Sensitivity)	__init__() (in McFlirtParams)	_getIndexes() (in mvpa.mappers.wavelet)
__call__() (in AUCErrorFx)	__init__() (in MelodicResults)	_getLevels() (in XMLBasedAtlas)
__call__() (in CorrErrorFx)	__init__() (in ColumnData)	_getLevelsDict() (in XMLBasedAtlas)
__call__() (in CorrErrorPFx)	__init__() (in DataReader)	_getLevelsDict_virtual() (in ReferencesAtlas)
__call__() (in MeanMismatchErrorFx)	__init__() (in SampleAttributes)	_getLevelsDict_virtual() (in XMLBasedAtlas)
__call__() (in RMSErrorFx)	__init__() (in SensorLocations)	_getListing() (in Collection)
__call__() (in RelativeRMSErrorFx)	__init__() (in TuebingenMEGSensorLocations)	_getName() (in CollectableAttribute)
__call__() (in Variance1SVFx)	__init__() (in XAVRSensorLocations)	_getNames() (in Collection)
__call__() (in _ErrorFx)	__init__() (in EEPBin)	_getNElements() (in FixedNElementTailSelector)
__call__() (in Harvester)	__init__() (in Hamster)	_getNElements() (in FractionTailSelector)
__call__() (in MapOverlap)	__init__() (in TuebingenMEG)	_getNElements() (in TailSelector)
__call__() (in OverAxis)	__init__() (in Parameter)	_getNLevels() (in PyMVPAAtlas)
__check_atlas_family() (in mvpa.base.externals)	__init__() (in AttributeWithUnique)	_getNLevelsVirtual() (in PyMVPAAtlas)
__check_shogun() (in mvpa.base.externals)	__init__() (in AttributesCollector)	_getNLevelsVirtual() (in ReferencesAtlas)
__check_weave() (in mvpa.base.externals)	__init__() (in ClassWithCollections)	_getNSamplesPerAttr() (in Dataset)
__condition_kernel() (in SVM)	__init__() (in CollectableAttribute)	_getOwner() (in Collection)
__copy__() (in SVMParameter)	__init__() (in Collection)	_getSampleIdsByAttr() (in Dataset)
__copy__() (in ClassifierError)	__init__() (in Harvestable)	_getSplitConfig() (in CustomSplitter)
__copy__() (in TransferError)	__init__() (in StateCollection)	_getSplitConfig() (in HalfSplitter)
__deepcopy__() (in SVMParameter)	__init__() (in StateVariable)	_getSplitConfig() (in NFoldSplitter)
__del__() (in Logger)	__init__() (in Event)	_getSplitConfig() (in NoneSplitter)
__del__() (in SVMModel)	__init__() (in Harvester)	_getSplitConfig() (in OddEvenSplitter)
__del__() (in _SVMCParameter)	__init__() (in HarvesterCall)	_getSplitConfig() (in Splitter)
__del__() (in SVMParameter)	__init__() (in MapOverlap)	_getuniqueattr() (in Dataset)
__del__() (in SVMProblem)	__init__() (in OverAxis)	_getUniqueValues() (in AttributeWithUnique)
__detrend_regress() (in mvpa.datasets.miscfx_sp)	__init__() (in VProperty)	_getVirtual() (in CollectableAttribute)
__doc__ (in kNN)	__isSet1() (in Collection)	_halflog2pi (in mvpa.clfs.gpr)
__doc__ (in ClassifierError)	__known_chunking_methods (in mvpa.misc.io.base)	_harvest() (in Harvestable)
__doc__ (in ConfusionBasedError)	__name__ (in mvpa.datasets.nifti)	_init_internals() (in GPR)
__doc__ (in TransferError)	__new__() (in Hamster)	_initialize() (in Collection)
__doc__ (in Dataset)	__new__() (in ClassWithCollections)	_initialize() (in StateCollection)
__doc__ (in ChannelDataset)	__repr__() (in Label)	_initMask() (in MaskMapper)
__doc__ (in EEPDataset)	__repr__() (in LabelsLevel)	_is_initializable() (in Collection)
__doc__ (in MappedDataset)	__repr__() (in Level)	_is_initializable() (in StateCollection)
__doc__ (in CustomSplitter)	__repr__() (in XMLAtlasException)	_keep_alive() (in mvpa.misc.copy)
__doc__ (in HalfSplitter)	__repr__() (in ConfigManager)	_KERNELS (in SVM)
__doc__ (in NFoldSplitter)	__repr__() (in _SVM)	_KERNELS (in SVM)
__doc__ (in NoneSplitter)	__repr__() (in BinaryClassifier)	_KNOWN (in mvpa.base.externals)
__doc__ (in OddEvenSplitter)	__repr__() (in BoostedClassifier)	_known_collections (in mvpa.misc.state)
__doc__ (in Splitter)	__repr__() (in Classifier)	_KNOWN_COPY_METHODS (in Harvestable)
__doc__ (in DenseArrayMapper)	__repr__() (in CombinedClassifier)	_KNOWN_IMPLEMENTATIONS (in SVM)
__doc__ (in ProjectionMapper)	__repr__() (in MulticlassClassifier)	_KNOWN_IMPLEMENTATIONS (in SVM)
__doc__ (in BoxcarMapper)	__repr__() (in ProxyClassifier)	_KNOWN_INTERNALS (in mvpa.clfs.warehouse)
__doc__ (in ICAMapper)	__repr__() (in BLR)	_KNOWN_KERNEL_PARAMS (in SVM)
__doc__ (in MaskMapper)	__repr__() (in GPR)	_KNOWN_KERNEL_PARAMS (in SVM)
__doc__ (in PCAMapper)	__repr__() (in Kernel)	_known_metrics (in DebugLogger)
__doc__ (in SampleGroupMapper)	__repr__() (in KernelConstant)	_known_modes (in NoneSplitter)
__doc__ (in SVDMapper)	__repr__() (in KernelExponential)	_KNOWN_PARAMS (in SVM)
__doc__ (in _WaveletMapper)	__repr__() (in KernelLinear)	_KNOWN_PARAMS (in SVM)
__doc__ (in DatasetMeasure)	__repr__() (in KernelMatern_3_2)	_label2oneofm() (in mvpa.clfs.smlr)
__doc__ (in Searchlight)	__repr__() (in KernelRationalQuadratic)	_LEGAL_CLFS (in GPRLinearWeights)
__doc__ (in ColumnData)	__repr__() (in KernelSquaredExponential)	_LEGAL_CLFS (in GPRWeights)
__f() (in PLR)	__repr__() (in kNN)	_LEGAL_CLFS (in LARSWeights)
__get__() (in VProperty)	__repr__() (in LARS)	_LEGAL_CLFS (in LinearSVMWeights)
__get_implementation() (in SVM)	__repr__() (in SVMModel)	_LEGAL_CLFS (in SMLRWeights)
__getattr__() (in XMLBasedAtlas)	__repr__() (in SVMParameter)	_LEGAL_CLFS (in Sensitivity)
__getattr__() (in MetaDataset)	__repr__() (in SVMProblem)	_loadData() (in PyMVPAAtlas)
__getattribute__() (in rv_semifrozen)	__repr__() (in PLR)	_loadData() (in XMLBasedAtlas)
__getattribute__() (in OptionGroups)	__repr__() (in RidgeReg)	_loadData() (in FSLAtlas)
__getattribute__() (in Hamster)	__repr__() (in Dataset)	_loadImages() (in PyMVPAAtlas)
__getattribute__() (in ClassWithCollections)	__repr__() (in FixedNElementTailSelector)	_loadImages() (in XMLBasedAtlas)
__getattribute__() (in Collection)	__repr__() (in FractionTailSelector)	_loadImages() (in FSLAtlas)
__getitem__() (in LabelsLevel)	__repr__() (in Mapper)	_make_centeredaxis() (in mvpa.misc.plot.erp)
__getitem__() (in XMLBasedAtlas)	__repr__() (in BoxcarMapper)	_MUSTHAVE (in Event)
__getitem__() (in TransformationBase)	__repr__() (in MaskMapper)	_NuSVM (in mvpa.clfs.svm)
__getitem__() (in Warehouse)	__repr__() (in DatasetMeasure)	_o_seta_ (in mvpa.misc.io.hamster)
__getitem__() (in Dataset)	__repr__() (in FeaturewiseDatasetMeasure)	_offset() (in mvpa.misc.plot.erp)
__getitem__() (in Collection)	__repr__() (in Sensitivity)	_openopt_debug() (in mvpa.clfs.model_selector)
__iadd__() (in SummaryStatistics)	__repr__() (in _ErrorFx)	_p2() (in mvpa.clfs.transerror)
__iadd__() (in Warehouse)	__repr__() (in ClassWithCollections)	_postcall() (in ClassifierError)
__iadd__() (in Dataset)	__repr__() (in Collection)	_postcall() (in TransferError)
__iadd__() (in ColumnData)	__resetChangedData() (in Classifier)	_postcall() (in DatasetMeasure)
__init__() (in CrossValidatedTransferError)	__set__() (in VProperty)	_postcall() (in FeaturewiseDatasetMeasure)
__init__() (in BaseAtlas)	__setattr__() (in rv_semifrozen)	_postpredict() (in Classifier)
__init__() (in Label)	__setattr__() (in Hamster)	_posttrain() (in BoostedClassifier)
__init__() (in LabelsLevel)	__setattr__() (in ClassWithCollections)	_posttrain() (in Classifier)
__init__() (in Level)	__setattr__() (in Collection)	_precall() (in ClassifierError)
__init__() (in PyMVPAAtlas)	__sg_helper() (in LinearSVMWeights)	_predict() (in BinaryClassifier)
__init__() (in ReferencesAtlas)	__Singleton (in mvpa.base)	_predict() (in BoostedClassifier)
__init__() (in ReferencesLevel)	__str__() (in Label)	_predict() (in Classifier)
__init__() (in XMLAtlasException)	__str__() (in Level)	_predict() (in CombinedClassifier)
__init__() (in XMLBasedAtlas)	__str__() (in Classifier)	_predict() (in FeatureSelectionClassifier)
__init__() (in FSLAtlas)	__str__() (in kNN)	_predict() (in MappedClassifier)
__init__() (in FSLLabelsAtlas)	__str__() (in SVMParameter)	_predict() (in ProxyClassifier)
__init__() (in FSLProbabilisticAtlas)	__str__() (in SummaryStatistics)	_predict() (in BLR)
__init__() (in Linear)	__str__() (in Dataset)	_predict() (in GPR)
__init__() (in MNI2Tal_MatthewBrett)	__str__() (in CustomSplitter)	_predict() (in kNN)
__init__() (in SpaceTransformation)	__str__() (in HalfSplitter)	_predict() (in LARS)
__init__() (in TransformationBase)	__str__() (in NFoldSplitter)	_predict() (in SVM)
__init__() (in TypeProxy)	__str__() (in NoneSplitter)	_predict() (in PLR)
__init__() (in WarningLog)	__str__() (in OddEvenSplitter)	_predict() (in RidgeReg)
__init__() (in _SingletonType)	__str__() (in Splitter)	_predict() (in SVM)
__init__() (in __Singleton)	__str__() (in DenseArrayMapper)	_predict() (in SMLR)
__init__() (in ConfigManager)	__str__() (in MaskMapper)	_prepredict() (in Classifier)
__init__() (in DebugLogger)	__str__() (in _ErrorFx)	_pretrain() (in Classifier)
__init__() (in LevelLogger)	__str__() (in DatasetError)	_procrust() (in PLS)
__init__() (in Logger)	__str__() (in UnknownStateError)	_pvalue() (in mvpa.clfs.stats)
__init__() (in OnceLogger)	__str__() (in ColumnData)	_pythonStepwiseRegression() (in SMLR)
__init__() (in RelativeTime)	__str__() (in TuebingenMEG)	_random_seed (in mvpa)
__init__() (in SetLogger)	__str__() (in Parameter)	_reconstruct() (in mvpa.misc.copy)
__init__() (in TraceBack)	__str__() (in ClassWithCollections)	_register_properties() (in SVMParameter)
__init__() (in _SVM)	__str__() (in CollectableAttribute)	_registerAttribute() (in Dataset)
__init__() (in BinaryClassifier)	__str__() (in Collection)	_registeredattributes (in Dataset)
__init__() (in BoostedClassifier)	__str__() (in StateVariable)	_regressionIsBogus() (in Classifier)
__init__() (in Classifier)	__wasDataChanged() (in Classifier)	_requiredattributes (in Dataset)
__init__() (in ClassifierCombiner)	_action() (in Collection)	_resetallunique() (in Dataset)
__init__() (in CombinedClassifier)	_adapt() (in AdaptiveNormal)	_resetEnabledTemporarily() (in StateCollection)
__init__() (in FeatureSelectionClassifier)	_adapt() (in AdaptiveNullDist)	_resetUnique() (in AttributeWithUnique)
__init__() (in MappedClassifier)	_adapt() (in AdaptiveRDist)	_reverse() (in WaveletPacketMapper)
__init__() (in MaximalVote)	_ATTRIBUTE_COLLECTIONS (in _SVM)	_reverse() (in WaveletTransformationMapper)
__init__() (in MulticlassClassifier)	_ATTRIBUTE_COLLECTIONS (in NullDist)	_reverse() (in _WaveletMapper)
__init__() (in ProxyClassifier)	_calc_pls() (in PLS)	_set() (in Parameter)
__init__() (in SplitClassifier)	_call() (in CrossValidatedTransferError)	_set() (in AttributeWithUnique)
__init__() (in BLR)	_call() (in GPRLinearWeights)	_set() (in CollectableAttribute)
__init__() (in GPR)	_call() (in GPRWeights)	_set() (in StateVariable)
__init__() (in Kernel)	_call() (in LARSWeights)	_setActive() (in SetLogger)
__init__() (in KernelConstant)	_call() (in LinearSVMWeights)	_setAnalyzers() (in CombinedFeaturewiseDatasetMeasure)
__init__() (in KernelExponential)	_call() (in LinearSVMWeights)	_setAttribs() (in Harvestable)
__init__() (in KernelLinear)	_call() (in LinearSVMWeights)	_setClassifier() (in Sensitivity)
__init__() (in KernelMatern_3_2)	_call() (in SMLRWeights)	_setClassifiers() (in BoostedClassifier)
__init__() (in KernelMatern_5_2)	_call() (in ClassifierError)	_setdataattr() (in Dataset)
__init__() (in KernelRationalQuadratic)	_call() (in ConfusionBasedError)	_setdebug() (in mvpa.clfs.sg.svm)
__init__() (in KernelSquaredExponential)	_call() (in TransferError)	_setEnabled() (in StateCollection)
__init__() (in kNN)	_call() (in OneWayAnova)	_setFElements() (in FractionTailSelector)
__init__() (in LARS)	_call() (in BoostedClassifierSensitivityAnalyzer)	_setFilter() (in DescreteMetric)
__init__() (in SVMModel)	_call() (in CombinedFeaturewiseDatasetMeasure)	_setHandlers() (in Logger)
__init__() (in _SVMCParameter)	_call() (in DatasetMeasure)	_setIndent() (in LevelLogger)
__init__() (in SVMParameter)	_call() (in FeaturewiseDatasetMeasure)	_setLevel() (in LevelLogger)
__init__() (in SVMProblem)	_call() (in MappedClassifierSensitivityAnalyzer)	_setMaxCount() (in WarningLog)
__init__() (in LinearSVMWeights)	_call() (in ProxyClassifierSensitivityAnalyzer)	_setMode() (in ElementSelector)
__init__() (in LinearSVMWeights)	_call() (in StaticDatasetMeasure)	_setName() (in CollectableAttribute)
__init__() (in SVM)	_call() (in CorrCoef)	_setName() (in Collection)
__init__() (in ModelSelector)	_call() (in IterativeRelief)	_setNElements() (in FixedNElementTailSelector)
__init__() (in PLR)	_call() (in IterativeReliefOnline)	_setOffsetByDepth() (in DebugLogger)
__init__() (in RidgeReg)	_call() (in IterativeReliefOnline_Devel)	_setOwner() (in Collection)
__init__() (in LinearSVMWeights)	_call() (in IterativeRelief_Devel)	_setParameter() (in SVMParameter)
__init__() (in SVM)	_call() (in NoisePerturbationSensitivity)	_setPrintsetid() (in SetLogger)
__init__() (in SMLR)	_call() (in PLS)	_setRetrainable() (in Classifier)
__init__() (in FixedNullDist)	_call() (in Searchlight)	_setRetrainable() (in GPR)
__init__() (in MCNullDist)	_call() (in SplitFeaturewiseMeasure)	_setStrategy() (in Splitter)
__init__() (in Nonparametric)	_caught_exceptions (in mvpa.base.externals)	_setTail() (in NullDist)
__init__() (in NullDist)	_changeTemporarily() (in StateCollection)	_setTail() (in TailSelector)
__init__() (in rv_semifrozen)	_check() (in ColumnData)	_setVirtual() (in CollectableAttribute)
__init__() (in LinearCSVMC)	_checkCopyConstructorArgs() (in Dataset)	_shapeSamples() (in Dataset)
__init__() (in LinearNuSVMC)	_checkData() (in Dataset)	_SingletonType (in mvpa.base)
__init__() (in RbfCSVMC)	_checkIndex() (in Collection)	_STATS_DESCRIPTION (in ConfusionMatrix)
__init__() (in RbfNuSVMC)	_checkRange() (in XMLBasedAtlas)	_STATS_DESCRIPTION (in RegressionStatistics)
__init__() (in ClassifierError)	_checkVersion() (in PyMVPAAtlas)	_STATS_DESCRIPTION (in SummaryStatistics)
__init__() (in ConfusionBasedError)	_checkVersion() (in XMLBasedAtlas)	_STRATEGIES (in Splitter)
__init__() (in ConfusionMatrix)	_checkVersion() (in FSLAtlas)	_SVM (in mvpa.clfs._svmbase)
__init__() (in ROCCurve)	_children_tags() (in XMLBasedAtlas)	_svm (in mvpa.clfs.libsvmc)
__init__() (in RegressionStatistics)	_chk_asarray() (in mvpa.clfs.stats)	_SVM_PARAMS (in _SVM)
__init__() (in SummaryStatistics)	_clear_svmc_params() (in SVMParameter)	_svmbase (in mvpa.clfs)
__init__() (in TransferError)	_clf_internals (in _SVM)	_SVMCParameter (in SVMParameter)
__init__() (in Warehouse)	_clf_internals (in Classifier)	_test() (in mvpa.misc.copy)
__init__() (in Dataset)	_clf_internals (in FeatureSelectionClassifier)	_tosg() (in mvpa.clfs.sg.svm)
__init__() (in ChannelDataset)	_clf_internals (in BLR)	_train() (in BinaryClassifier)
__init__() (in EEPDataset)	_clf_internals (in GPR)	_train() (in BoostedClassifier)
__init__() (in EventDataset)	_clf_internals (in kNN)	_train() (in Classifier)
__init__() (in MappedDataset)	_clf_internals (in LARS)	_train() (in CombinedClassifier)
__init__() (in MaskedDataset)	_clf_internals (in SVM)	_train() (in FeatureSelectionClassifier)
__init__() (in MetaDataset)	_clf_internals (in RidgeReg)	_train() (in MappedClassifier)
__init__() (in ERNiftiDataset)	_clf_internals (in SVM)	_train() (in MulticlassClassifier)
__init__() (in NiftiDataset)	_clf_internals (in SMLR)	_train() (in ProxyClassifier)
__init__() (in CustomSplitter)	_closeOpenedHandlers() (in Logger)	_train() (in SplitClassifier)
__init__() (in HalfSplitter)	_cls_repr() (in Collection)	_train() (in BLR)
__init__() (in NFoldSplitter)	_cls_repr() (in ParameterCollection)	_train() (in GPR)
__init__() (in NoneSplitter)	_cls_repr() (in SampleAttributesCollection)	_train() (in kNN)
__init__() (in OddEvenSplitter)	_cls_repr() (in StateCollection)	_train() (in LARS)
__init__() (in Splitter)	_col2class (in mvpa.misc.state)	_train() (in SVM)
__init__() (in FeatureSelection)	_COLLECTIONS_ORDER (in mvpa.misc.state)	_train() (in PLR)
__init__() (in FeatureSelectionPipeline)	_COLLISION_RESOLUTIONS (in BoxcarMapper)	_train() (in RidgeReg)
__init__() (in SensitivityBasedFeatureSelection)	_compare_lists() (in XMLBasedAtlas)	_train() (in SVM)
__init__() (in BestDetector)	_compute() (in ConfusionMatrix)	_train() (in SMLR)
__init__() (in ElementSelector)	_compute() (in ROCCurve)	_train() (in ProjectionMapper)
__init__() (in FixedErrorThresholdStopCrit)	_compute() (in RegressionStatistics)	_train() (in ICAMapper)
__init__() (in FixedNElementTailSelector)	_compute() (in SummaryStatistics)	_train() (in PCAMapper)
__init__() (in FractionTailSelector)	_computeFilter() (in DescreteMetric)	_train() (in SVDMapper)
__init__() (in MultiStopCrit)	_copy_dispatch (in mvpa.misc.copy)	_uniqueattributes (in Dataset)
__init__() (in NBackHistoryStopCrit)	_copy_immutable() (in mvpa.misc.copy)	_updateOwner() (in Collection)
__init__() (in NStepsStopCrit)	_copy_inst() (in mvpa.misc.copy)	_VALID_BACKENDS (in mvpa.clfs.svm)
__init__() (in RangeElementSelector)	_copy_states_() (in StateCollection)	_validate_indexes_uniq_sorted() (in mvpa.datasets.base)
__init__() (in TailSelector)	_copy_with_constructor() (in mvpa.misc.copy)	_verboseCallback() (in mvpa.misc.cmdline)
__init__() (in IFS)	_copy_with_copy_method() (in mvpa.misc.copy)	_waveletFamilyCallback() (in mvpa.misc.cmdline)
__init__() (in RFE)	_cStepwiseRegression (in mvpa.clfs.smlr)	_WaveletMapper (in mvpa.mappers.wavelet)
__init__() (in DenseArrayMapper)	_debugCallback() (in mvpa.misc.cmdline)

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