Module base

Base classes for Anatomy atlases support

TODOs:

Classes

BaseAtlas
Base class for the atlases.

XMLAtlasException
Exception to be thrown if smth goes wrong dealing with XML based atlas

XMLBasedAtlas

Label
Represents a label.

Level
Represents a level.

LabelsLevel
Level of labels.

ReferencesLevel
Level which carries reference points

PyMVPAAtlas
Base class for PyMVPA atlases, such as LabelsAtlas and ReferenceAtlas

LabelsAtlas
Atlas which provides labels for the given coordinate

ReferencesAtlas
Atlas which provides references to the other atlases.

Functions

checkRange(coord, range)
Check if coordinates are within range (0,0,0) - (range) Return True on success

source code

Imports: externals, etree, objectify, os, re, N, norm, SpaceTransformation, Linear, reuseAbsolutePath, NiftiImage, warning, debug

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