Source Code for Module mvpa.suite

  1  # emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*- 
  2  # vi: set ft=python sts=4 ts=4 sw=4 et: 
  3  ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ## 
  4  # 
  5  #   See COPYING file distributed along with the PyMVPA package for the 
  6  #   copyright and license terms. 
  7  # 
  8  ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ## 
  9  """MultiVariate Pattern Analysis -- load helper 
 10   
 11  If you don't like to specify exact location of any particular 
 12  functionality within PyMVPA, please simply:: 
 13   
 14    from mvpa.suite import * 
 15   
 16  or 
 17   
 18    import mvpa.suite 
 19   
 20  """ 
 21   
 22  __docformat__ = 'restructuredtext' 
 23   
 24   
 25  from mvpa import * 
 26   
 27  from mvpa.base import * 
 28  from mvpa.base.config import * 
 29  from mvpa.base.verbosity import * 
 30   
 31  from mvpa.algorithms.cvtranserror import * 
 32   
 33  from mvpa import clfs 
 34  from mvpa.clfs.distance import * 
 35  from mvpa.clfs.kernel import * 
 36  from mvpa.clfs.base import * 
 37  from mvpa.clfs.meta import * 
 38  from mvpa.clfs.knn import * 
 39  if externals.exists('lars'): 
 40      from mvpa.clfs.lars import * 
 41  if externals.exists('elasticnet'): 
 42      from mvpa.clfs.enet import * 
 43  if externals.exists('glmnet'): 
 44      from mvpa.clfs.glmnet import * 
 45  from mvpa.clfs.smlr import * 
 46  from mvpa.clfs.blr import * 
 47  from mvpa.clfs.stats import * 
 48  if externals.exists('libsvm') or externals.exists('shogun'): 
 49      from mvpa.clfs.svm import * 
 50  from mvpa.clfs.transerror import * 
 51  from mvpa.clfs.warehouse import * 
 52   
 53  from mvpa import datasets 
 54  from mvpa.datasets import * 
 55  from mvpa.datasets.meta import * 
 56  from mvpa.datasets.masked import * 
 57  from mvpa.datasets.miscfx import * 
 58  from mvpa.datasets.channel import * 
 59  from mvpa.datasets.event import * 
 60  from mvpa.datasets.eep import * 
 61  if externals.exists('nifti'): 
 62      from mvpa.datasets.nifti import * 
 63   
 64  from mvpa.datasets import splitters 
 65  from mvpa.datasets.splitters import * 
 66   
 67  from mvpa import featsel 
 68  from mvpa.featsel.base import * 
 69  from mvpa.featsel.helpers import * 
 70  from mvpa.featsel.ifs import * 
 71  from mvpa.featsel.rfe import * 
 72   
 73  from mvpa import mappers 
 74  #from mvpa.mappers import * 
 75  from mvpa.mappers.base import * 
 76  from mvpa.mappers.metric import * 
 77  from mvpa.mappers.mask import * 
 78  from mvpa.mappers.svd import * 
 79  from mvpa.mappers.boxcar import * 
 80  from mvpa.mappers.samplegroup import * 
 81  from mvpa.mappers.som import * 
 82  from mvpa.mappers.array import * 
 83  if externals.exists('scipy'): 
 84      from mvpa.mappers.zscore import ZScoreMapper 
 85  if externals.exists('mdp'): 
 86      from mvpa.mappers.pca import * 
 87      from mvpa.mappers.ica import * 
 88  if externals.exists('mdp >= 2.4'): 
 89      from mvpa.mappers.lle import * 
 90   
 91  from mvpa import measures 
 92  from mvpa.measures.anova import * 
 93  from mvpa.measures.glm import * 
 94  from mvpa.measures.irelief import * 
 95  from mvpa.measures.base import * 
 96  from mvpa.measures.noiseperturbation import * 
 97  from mvpa.measures.searchlight import * 
 98  from mvpa.measures.splitmeasure import * 
 99  from mvpa.measures.corrstability import * 
100   
101  from mvpa.support.copy import * 
102  from mvpa.misc.fx import * 
103  from mvpa.misc.errorfx import * 
104  from mvpa.misc.cmdline import * 
105  from mvpa.misc.data_generators import * 
106  from mvpa.misc.exceptions import * 
107  from mvpa.misc import * 
108  from mvpa.misc.io import * 
109  from mvpa.misc.io.eepbin import * 
110  from mvpa.misc.io.meg import * 
111  if externals.exists('cPickle') and externals.exists('gzip'): 
112      from mvpa.misc.io.hamster import * 
113  from mvpa.misc.fsl import * 
114  from mvpa.misc.bv import * 
115  from mvpa.misc.bv.base import * 
116  from mvpa.misc.param import * 
117  from mvpa.misc.state import * 
118  from mvpa.misc.support import * 
119  from mvpa.misc.transformers import * 
120   
121  if externals.exists("nifti"): 
122      from mvpa.misc.fsl.melodic import * 
123   
124  if externals.exists("pylab"): 
125      from mvpa.misc.plot import * 
126      from mvpa.misc.plot.erp import * 
127      if externals.exists(['griddata', 'scipy']): 
128          from mvpa.misc.plot.topo import * 
129      if externals.exists('nifti'): 
130          from mvpa.misc.plot.mri import plotMRI 
131   
132  if externals.exists("scipy"): 
133      from mvpa.measures.corrcoef import * 
134      from mvpa.measures.ds import * 
135      from mvpa.clfs.ridge import * 
136      from mvpa.clfs.plr import * 
137      from mvpa.misc.stats import * 
138      from mvpa.clfs.gpr import * 
139   
140  if externals.exists("pywt"): 
141      from mvpa.mappers.wavelet import * 
142   
143  if externals.exists("pylab"): 
144      import pylab as P 
145   
146  if externals.exists("lxml") and externals.exists("nifti"): 
147      from mvpa.atlases import * 
148