atlases.fsl

Module: atlases.fsl

Inheritance diagram for mvpa.atlases.fsl:

FSL atlases interfaces

Classes

FSLAtlas

class mvpa.atlases.fsl.FSLAtlas(*args, **kwargs)

Bases: mvpa.atlases.base.XMLBasedAtlas

Base class for FSL atlases

Parameters:

• filename (string) – Filename for the xml definition of the atlas
• resolution (None or float) – Some atlases link to multiple images at different resolutions. if None – best resolution is selected using 0th dimension resolution

FSLLabelsAtlas

class mvpa.atlases.fsl.FSLLabelsAtlas(*args, **kwargs)

Bases: mvpa.atlases.base.XMLBasedAtlas

FSLProbabilisticAtlas

class mvpa.atlases.fsl.FSLProbabilisticAtlas(thr=0.0, strategy='all', sort=True, *args, **kwargs)

Bases: mvpa.atlases.fsl.FSLAtlas

Parameters:

• thr (float) – Value to threshold at
• strategy (basestring) – Possible values all - all entries above thr max - entry with maximal value
• sort (bool) – Either to sort entries for ‘all’ strategy according to probability

labelVoxel(c, levels=None)