TBLASTX 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|1348853|gb|G26621|G26621 human STS
STS_D12006.gi|1396339|gb|G27620|G27620 human STS SHGC-32705.
         (615 letters)

Database: data/sts
           87,792 sequences; 31,998,854 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|1348853|gb|G26621|G26621 human STS STS_D12006. >gi|1396339|g...   398  e-111
gi|1348016|gb|G25784|G25784 human STS EST47998.                      302  1e-82
gi|3403105|gb|G41148|G41148 Z7324 Zebrafish AB Danio rerio STS ...    31  0.60
gi|1234967|emb|Z53521|HSB316XA9 H.sapiens (D22S1166) DNA segmen...    30  0.83
gi|4185670|gb|G42865|G42865 Xq3845 KWOK Homo sapiens STS genomi...    30  1.1
gi|4757419|gb|G49246.1|G49246 stbK116F5_30376 chromosome 22 gen...    29  1.6
gi|6120694|gb|G55375.1|G55375 SHGC-100697 Human Homo sapiens ST...    29  3.0
gi|5225124|gb|G53947.1|G53947 SHGC-85304 Human Homo sapiens STS...    29  3.0
gi|1311530|gb|L77996|HUMSWX945 Human chromosome X STS sWXD945, ...    28  4.1
gi|2734624|gb|G36957|G36957 SHGC-56642 Human Homo sapiens STS cDNA    28  4.1
gi|4631600|dbj|AU046965.1|AU046965 Rattus norvegicus, OTSUKA cl...    28  4.1
gi|4631518|dbj|AU046883.1|AU046883 Rattus norvegicus, OTSUKA cl...    28  4.1
gi|2226478|gb|G33174|G33174 human STS SHGC-6097 clone pG-2470         28  4.1
gi|938611|gb|G08061|G08061 human STS CHLC.GGAA7E02.P7438 clone ...    27  7.7
gi|307789|gb|L18105|HUMUT1736 Human STS UT1736.                       27  7.7
gi|859804|gb|G06559|G06559 human STS WI-7401.                         27  7.7
gi|4493143|gb|G46852.1|G46852 Z14841_1 Zebrafish AB Danio rerio...    27  7.7
gi|4492122|gb|G45831.1|G45831 Z4588_1 Zebrafish AB Danio rerio ...    27  7.7
gi|6121804|gb|G56635.1|G56635 SHGC-102032 Human Homo sapiens ST...    27  7.7

>gi|1348853|gb|G26621|G26621 human STS STS_D12006.
           >gi|1396339|gb|G27620|G27620 human STS SHGC-32705.
           Length = 615
           
 Score =  367 bits (796), Expect = e-102
 Identities = 192/200 (96%), Positives = 192/200 (96%)
 Frame = +2 / +2

                                                                       
Query: 2   IRMPLHS*DSSFCPL*QEKWECMXXXXXXXXRPKRCLQPHPLNWP*LGLNALMQNPLTKA 181
           IRMPLHS*DSSFCPL*QEKWECM        RPKRCLQPHPLNWP*LGLNALMQNPLTKA
Sbjct: 2   IRMPLHS*DSSFCPL*QEKWECMQSSQKKQKRPKRCLQPHPLNWP*LGLNALMQNPLTKA 181

                                                                       
Query: 182 HRLFQTSIVFYVTCFTASSQQLLTTAQFSPLQPLFWWTNNLGTPNPGRKNIQHYEXALX* 361
           HRLFQTSIVFYVTCFTASSQQLLTTAQFSPLQPLFWWTNNLGTPNPGRKNIQHYE AL *
Sbjct: 182 HRLFQTSIVFYVTCFTASSQQLLTTAQFSPLQPLFWWTNNLGTPNPGRKNIQHYEXALX* 361

                                                                       
Query: 362 S*NGFPKLVTHGPGXVXLXLXGLSSFQEFXSTVANPWGX*XXXXXXXXXFXXGXRXXXLX 541
           S*NGFPKLVTHGPG V L L GLSSFQEF STVANPWG *         F  G R   L 
Sbjct: 362 S*NGFPKLVTHGPGXVXLXLXGLSSFQEFXSTVANPWGX*XXXXXXXXXFXXGXRXXXLX 541

                               
Query: 542 XXXGGCXXVXXVXXXWXXXF 601
              GGC  V  V   W   F
Sbjct: 542 XXXGGCXXVXXVXXXWXXXF 601


 Score =  350 bits (759), Expect = 3e-97
 Identities = 195/205 (95%), Positives = 195/205 (95%)
 Frame = +1 / +1

                                                                       
Query: 1   DQNAPPLMRLFILSTLTGKVGMYAELSKETKKAKTVPSATSSELALTWTKCTNAKSLDKS 180
           DQNAPPLMRLFILSTLTGKVGMYAELSKETKKAKTVPSATSSELALTWTKCTNAKSLDKS
Sbjct: 1   DQNAPPLMRLFILSTLTGKVGMYAELSKETKKAKTVPSATSSELALTWTKCTNAKSLDKS 180

                                                                       
Query: 181 A*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVLVDK*PRYSKSWQEKYTAL*XSTXV 360
           A*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVLVDK*PRYSKSWQEKYTAL* ST V
Sbjct: 181 A*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVLVDK*PRYSKSWQEKYTAL*XSTXV 360

                                                                       
Query: 361 ILKWISKAGYTWPWXXXIXFXXAFFXXXXXXXXXXXXXXLXGXVX*XXXXSXGPXXXXVX 540
           ILKWISKAGYTWPW   I F  AFF              L G V *    S GP    V 
Sbjct: 361 ILKWISKAGYTWPWXXXIXFXXAFFXSGVXVNGGKSXGXLXGXVX*XXXXSXGPXXXXVX 540

                                    
Query: 541 XPXGWVXXGXFXFXXXXXXFXXXLG 615
            P GWV  G F F      F   LG
Sbjct: 541 XPXGWVXXGXFXFXXXXXXFXXXLG 615


 Score =  180 bits (387), Expect(2) = 9e-91
 Identities = 74/74 (100%), Positives = 74/74 (100%)
 Frame = +3 / +3

                                                                       
Query: 3   SECPSTHETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHIL*IGPDLD*MH*CKIP*QKR 182
           SECPSTHETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHIL*IGPDLD*MH*CKIP*QKR
Sbjct: 3   SECPSTHETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHIL*IGPDLD*MH*CKIP*QKR 182

                         
Query: 183 IGYFKPALFFM*PV 224
           IGYFKPALFFM*PV
Sbjct: 183 IGYFKPALFFM*PV 224


 Score =  171 bits (368), Expect(2) = 9e-91
 Identities = 114/114 (100%), Positives = 114/114 (100%)
 Frame = +3 / +3

                                                                       
Query: 273 YSHCSGGQIT*VLQILAGKIYSIMXQHSXNPKMDFQSWLHMALXXSY*XXXGFLXFRSXG 452
           YSHCSGGQIT*VLQILAGKIYSIM QHS NPKMDFQSWLHMAL  SY*   GFL FRS G
Sbjct: 273 YSHCSGGQIT*VLQILAGKIYSIMXQHSXNPKMDFQSWLHMALXXSY*XXXGFLXFRSXG 452

                                                                 
Query: 453 QRWQIXGVXXWXGXLXXXXFXGAXGGXGXXSXXVGAXGXXXFXXXGXXXXXXXW 614
           QRWQI GV  W G L    F GA GG G  S  VGA G   F   G       W
Sbjct: 453 QRWQIXGVXXWXGXLXXXXFXGAXGGXGXXSXXVGAXGXXXFXXXGXXXXXXXW 614


 Score =  398 bits (864), Expect = e-111
 Identities = 205/205 (100%), Positives = 205/205 (100%)
 Frame = -1 / -1

                                                                       
Query: 615 PKXXXKXXXXXXKTKXTXXHPPXWXXNXXXLWPXXXXXXLXNXXX*XPXGFATVDXNS*X 436
           PK   K      KTK T  HPP W  N   LWP      L N   * P GFATVD NS* 
Sbjct: 615 PKXXXKXXXXXXKTKXTXXHPPXWXXNXXXLWPXXXXXXLXNXXX*XPXGFATVDXNS*X 436

                                                                       
Query: 435 EESPXKXNXTXPGPCVTSFGNPF*DYXSAXS*CCIFFLPGFGVPRLFVHQNNGCKGEN*A 256
           EESP K N T PGPCVTSFGNPF*DY SA S*CCIFFLPGFGVPRLFVHQNNGCKGEN*A
Sbjct: 435 EESPXKXNXTXPGPCVTSFGNPF*DYXSAXS*CCIFFLPGFGVPRLFVHQNNGCKGEN*A 256

                                                                       
Query: 255 VVRSC*EDAVKQVT*KTMLV*NNLCAFVKGFCISAFSPSQGQFRGCG*RHRFGLFCFF*E 76
           VVRSC*EDAVKQVT*KTMLV*NNLCAFVKGFCISAFSPSQGQFRGCG*RHRFGLFCFF*E
Sbjct: 255 VVRSC*EDAVKQVT*KTMLV*NNLCAFVKGFCISAFSPSQGQFRGCG*RHRFGLFCFF*E 76

                                    
Query: 75  LCIHSHFSCQSGQNEESHEWRGILI 1
           LCIHSHFSCQSGQNEESHEWRGILI
Sbjct: 75  LCIHSHFSCQSGQNEESHEWRGILI 1


 Score =  390 bits (846), Expect = e-109
 Identities = 196/196 (100%), Positives = 196/196 (100%)
 Frame = -3 / -3

                                                                       
Query: 589 PXXXNXXNPXAPTXXXX*PXPPXAPXKXXXXXXPXXLXTPXICHR*PKLLKXRKPX*XQX 410
           P   N  NP APT    *P PP AP K      P  L TP ICHR*PKLLK RKP * Q 
Sbjct: 589 PXXXNXXNPXAPTXXXX*PXPPXAPXKXXXXXXPXXLXTPXICHR*PKLLKXRKPX*XQX 410

                                                                       
Query: 409 DXXRAMCNQLWKSILGLXECXFIMLYIFPARIWST*VICPPEQWL*RRKLSSGQKLLRRC 230
           D  RAMCNQLWKSILGL EC FIMLYIFPARIWST*VICPPEQWL*RRKLSSGQKLLRRC
Sbjct: 409 DXXRAMCNQLWKSILGLXECXFIMLYIFPARIWST*VICPPEQWL*RRKLSSGQKLLRRC 230

                                                                       
Query: 229 GKTGYIKNNAGLK*PMRFCQGILH*CI*SKSGPIQRMWLKAPFWPFLFLLRALHTFPLFL 50
           GKTGYIKNNAGLK*PMRFCQGILH*CI*SKSGPIQRMWLKAPFWPFLFLLRALHTFPLFL
Sbjct: 229 GKTGYIKNNAGLK*PMRFCQGILH*CI*SKSGPIQRMWLKAPFWPFLFLLRALHTFPLFL 50

                           
Query: 49  SKWTK*RVS*VEGHSD 2
           SKWTK*RVS*VEGHSD
Sbjct: 49  SKWTK*RVS*VEGHSD 2


 Score =  316 bits (684), Expect = 7e-87
 Identities = 146/146 (100%), Positives = 146/146 (100%)
 Frame = -2 / -2

                                                                       
Query: 440 EXKKAXXXSIXXXQGHV*PALEIHFRIT*VLXHNAVYFSCQDLEYLGYLSTRTMAVKEKI 261
           E KKA   SI   QGHV*PALEIHFRIT*VL HNAVYFSCQDLEYLGYLSTRTMAVKEKI
Sbjct: 440 EXKKAXXXSIXXXQGHV*PALEIHFRIT*VLXHNAVYFSCQDLEYLGYLSTRTMAVKEKI 261

                                                                       
Query: 260 EQWSEAAEKMR*NRLHKKQCWFEITYALLSRDFALVHLVQVRANSEDVAEGTVLAFFVSF 81
           EQWSEAAEKMR*NRLHKKQCWFEITYALLSRDFALVHLVQVRANSEDVAEGTVLAFFVSF
Sbjct: 260 EQWSEAAEKMR*NRLHKKQCWFEITYALLSRDFALVHLVQVRANSEDVAEGTVLAFFVSF 81

                                     
Query: 80  ESSAYIPTFPVKVDKMKSLMSGGAF* 3
           ESSAYIPTFPVKVDKMKSLMSGGAF*
Sbjct: 80  ESSAYIPTFPVKVDKMKSLMSGGAF* 3


>gi|1348016|gb|G25784|G25784 human STS EST47998.
           Length = 617
           
 Score =  170 bits (366), Expect(2) = 3e-63
 Identities = 71/74 (95%), Positives = 71/74 (95%)
 Frame = +3 / +3

                                                                       
Query: 3   SECPSTHETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHIL*IGPDLD*MH*CKIP*QKR 182
           S CPSTHETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHIL*IGPDLD*  *CKIP*QKR
Sbjct: 3   SXCPSTHETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHIL*IGPDLD*XX*CKIP*QKR 182

                         
Query: 183 IGYFKPALFFM*PV 224
           IGYFKPALFFM*PV
Sbjct: 183 IGYFKPALFFM*PV 224


 Score = 89.0 bits (188), Expect(2) = 3e-63
 Identities = 42/67 (62%), Positives = 43/67 (63%)
 Frame = +3 / +3

                                                                       
Query: 273 YSHCSGGQIT*VLQILAGKIYSIMXQHSXNPKMDFQSWLHMALXXSY*XXXGFLXFRSXG 452
           YSHCSGGQIT*VLQILAGKIYSIM QHS   K  FQSWLHM     +     F   R  G
Sbjct: 273 YSHCSGGQIT*VLQILAGKIYSIMKQHSVILKWIFQSWLHMXCKVLFKFKRPFSFTRGLG 452

                  
Query: 453 QRWQIXG 473
           QR Q  G
Sbjct: 453 QRXQTPG 473


 Score =  273 bits (590), Expect = 7e-74
 Identities = 121/133 (90%), Positives = 121/133 (90%)
 Frame = +1 / +1

                                                                       
Query: 1   DQNAPPLMRLFILSTLTGKVGMYAELSKETKKAKTVPSATSSELALTWTKCTNAKSLDKS 180
           DQ APPLMRLFILSTLTGKVGMYAELSKETKKAKTVPSATSSELALTWTK  NAKSLDKS
Sbjct: 1   DQXAPPLMRLFILSTLTGKVGMYAELSKETKKAKTVPSATSSELALTWTKXXNAKSLDKS 180

                                                                       
Query: 181 A*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVLVDK*PRYSKSWQEKYTAL*XSTXV 360
           A*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVLVDK*PRYSKSWQEKYTAL* ST  
Sbjct: 181 A*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVLVDK*PRYSKSWQEKYTAL*NSTQ* 360

                        
Query: 361 ILKWISKAGYTWP 399
                SKAGYT P
Sbjct: 361 S*NGFSKAGYTXP 399


 Score =  274 bits (593), Expect(2) = 8e-76
 Identities = 112/131 (85%), Positives = 112/131 (85%)
 Frame = +2 / +2

                                                                       
Query: 2   IRMPLHS*DSSFCPL*QEKWECMXXXXXXXXRPKRCLQPHPLNWP*LGLNALMQNPLTKA 181
           IR PLHS*DSSFCPL*QEKWECM        RPKRCLQPHPLNWP*LGL  LMQNPLTKA
Sbjct: 2   IRXPLHS*DSSFCPL*QEKWECMQSSQKKQKRPKRCLQPHPLNWP*LGLXPLMQNPLTKA 181

                                                                       
Query: 182 HRLFQTSIVFYVTCFTASSQQLLTTAQFSPLQPLFWWTNNLGTPNPGRKNIQHYEXALX* 361
           HRLFQTSIVFYVTCFTASSQQLLTTAQF PLQPLFWWTNNLGTPNPGRKNIQHYE AL  
Sbjct: 182 HRLFQTSIVFYVTCFTASSQQLLTTAQFFPLQPLFWWTNNLGTPNPGRKNIQHYETALSN 361

                      
Query: 362 S*NGFPKLVTH 394
               FPKLVTH
Sbjct: 362 PKMDFPKLVTH 394


 Score = 27.2 bits (53), Expect(2) = 8e-76
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2 / +2

                        
Query: 437 FQEFXSTVANPWG 475
           +Q F ST ANPWG
Sbjct: 437 YQGFRSTXANPWG 475


 Score =  302 bits (653), Expect = 1e-82
 Identities = 128/157 (81%), Positives = 132/157 (83%)
 Frame = -3 / -2

                                                                       
Query: 472 PXICHR*PKLLKXRKPX*XQXDXXRAMCNQLWKSILGLXECXFIMLYIFPARIWST*VIC 293
           P +C R*PK L   K         + MCNQLWK    + EC FIMLYIFPARIWST*VIC
Sbjct: 472 PGVCXR*PKPLVNEKGLLNLNKTLQXMCNQLWKIHFRITECCFIMLYIFPARIWST*VIC 293

                                                                       
Query: 292 PPEQWL*RRKLSSGQKLLRRCGKTGYIKNNAGLK*PMRFCQGILH*CI*SKSGPIQRMWL 113
           PPEQWL*R+KLSSGQKLLRRCGKTGYIKNNAGLK*PMRFCQGILH*  *SKSGPIQRMWL
Sbjct: 292 PPEQWL*RKKLSSGQKLLRRCGKTGYIKNNAGLK*PMRFCQGILH*XX*SKSGPIQRMWL 113

                                                
Query: 112 KAPFWPFLFLLRALHTFPLFLSKWTK*RVS*VEGHSD 2
           KAPFWPFLFLLRALHTFPLFLSKWTK*RVS*VEG SD
Sbjct: 112 KAPFWPFLFLLRALHTFPLFLSKWTK*RVS*VEGXSD 2


 Score =  276 bits (598), Expect = 5e-75
 Identities = 122/130 (93%), Positives = 122/130 (93%)
 Frame = -2 / -1

                                                                       
Query: 398 GHV*PALEIHFRIT*VLXHNAVYFSCQDLEYLGYLSTRTMAVKEKIEQWSEAAEKMR*NR 219
           GHV*PALE  F   *VL HNAVYFSCQDLEYLGYLSTRTMAVKEKIEQWSEAAEKMR*NR
Sbjct: 398 GHV*PALENPF*DY*VLFHNAVYFSCQDLEYLGYLSTRTMAVKEKIEQWSEAAEKMR*NR 219

                                                                       
Query: 218 LHKKQCWFEITYALLSRDFALVHLVQVRANSEDVAEGTVLAFFVSFESSAYIPTFPVKVD 39
           LHKKQCWFEITYALLSRDFAL  LVQVRANSEDVAEGTVLAFFVSFESSAYIPTFPVKVD
Sbjct: 218 LHKKQCWFEITYALLSRDFALXXLVQVRANSEDVAEGTVLAFFVSFESSAYIPTFPVKVD 39

                     
Query: 38  KMKSLMSGGA 9
           KMKSLMSGGA
Sbjct: 38  KMKSLMSGGA 9


 Score =  290 bits (628), Expect = 4e-79
 Identities = 119/131 (90%), Positives = 120/131 (90%)
 Frame = -1 / -3

                                                                       
Query: 393 CVTSFGNPF*DYXSAXS*CCIFFLPGFGVPRLFVHQNNGCKGEN*AVVRSC*EDAVKQVT 214
           CVTSFG       SA S*CCIFFLPGFGVPRLFVHQNNGCKG+N*AVVRSC*EDAVKQVT
Sbjct: 393 CVTSFGKSILGLLSAVS*CCIFFLPGFGVPRLFVHQNNGCKGKN*AVVRSC*EDAVKQVT 214

                                                                       
Query: 213 *KTMLV*NNLCAFVKGFCISAFSPSQGQFRGCG*RHRFGLFCFF*ELCIHSHFSCQSGQN 34
           *KTMLV*NNLCAFVKGFCI  FSPSQGQFRGCG*RHRFGLFCFF*ELCIHSHFSCQSGQN
Sbjct: 213 *KTMLV*NNLCAFVKGFCIXGFSPSQGQFRGCG*RHRFGLFCFF*ELCIHSHFSCQSGQN 34

                      
Query: 33  EESHEWRGILI 1
           EESHEWRG LI
Sbjct: 33  EESHEWRGXLI 1


>gi|3403105|gb|G41148|G41148 Z7324 Zebrafish AB Danio rerio STS
           genomic
           Length = 351
           
 Score = 30.8 bits (61), Expect = 0.60
 Identities = 11/27 (40%), Positives = 18/27 (65%)
 Frame = +1 / +2

                                      
Query: 211 LCNLFYRIFSAASDHCSIFSFTAIVLV 291
           L NL +R+F++  DHCS+  F   V++
Sbjct: 2   LTNLIFRLFTSK*DHCSLKQFNNKVVI 82


>gi|1234967|emb|Z53521|HSB316XA9 H.sapiens (D22S1166) DNA segment
           containing (CA) repeat; clone AFMb316xa9; single read,
           sequence tagged site [Homo sapiens]
           Length = 345
           
 Score = 30.4 bits (60), Expect = 0.83
 Identities = 10/19 (52%), Positives = 13/19 (67%)
 Frame = -3 / +1

                              
Query: 316 IWST*VICPPEQWL*RRKL 260
           +W T  +CPP  W *RR+L
Sbjct: 226 LWGTAPLCPPVPWA*RRQL 282


>gi|4185670|gb|G42865|G42865 Xq3845 KWOK Homo sapiens STS genomic,
           sequence tagged site [Homo sapiens]
           Length = 1200
           
 Score = 29.9 bits (59), Expect = 1.1
 Identities = 10/24 (41%), Positives = 14/24 (57%)
 Frame = -3 / -2

                                   
Query: 106 PFWPFLFLLRALHTFPLFLSKWTK 35
           P WP + LL  +H+FP  +  W K
Sbjct: 716 PEWPSINLLPGMHSFPRVIPCWEK 645


>gi|4757419|gb|G49246.1|G49246 stbK116F5_30376 chromosome 22 genomic
           clone Homo sapiens STS genomic clone 116F5, sequence
           tagged site
           Length = 375
           
 Score = 29.5 bits (58), Expect = 1.6
 Identities = 15/34 (44%), Positives = 17/34 (49%)
 Frame = -3 / -2

                                             
Query: 106 PFWPFLFLLRALHTFPLFLSKWTK*RVS*VEGHS 5
           P W   FLLR LHT P    K+    V+  EG S
Sbjct: 176 PGWTLRFLLRGLHTPPKAAEKFPSQGVAEPEGFS 75


>gi|6120694|gb|G55375.1|G55375 SHGC-100697 Human Homo sapiens STS
           genomic, sequence tagged site
           Length = 460
           
 Score = 28.6 bits (56), Expect = 3.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3 / +1

                                       
Query: 15  STHETLHFVHFDRKSGNVCRALKRNKKG 98
           +TH    F+H  +K  N+C  +  N++G
Sbjct: 82  TTHSMTVFLHVKKKLSNICIYMPENREG 165


>gi|5225124|gb|G53947.1|G53947 SHGC-85304 Human Homo sapiens STS
           genomic, sequence tagged site
           Length = 444
           
 Score = 28.6 bits (56), Expect = 3.0
 Identities = 10/24 (41%), Positives = 15/24 (61%)
 Frame = +1 / -2

                                   
Query: 202 HCFLCNLFYRIFSAASDHCSIFSF 273
           HC L ++F RIF    +  S+F+F
Sbjct: 443 HCHLSSVFCRIFFTLEESLSLFAF 372


>gi|1311530|gb|L77996|HUMSWX945 Human chromosome X STS sWXD945,
           single read.
           Length = 196
           
 Score = 28.1 bits (55), Expect = 4.1
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +3 / -2

                                            
Query: 24  ETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHI 122
           E +H+V F +  G +  + ++ ++ QN   SH+
Sbjct: 141 EKIHYVLF*KNCGKIMTS*RQRQENQNNLLSHV 43


>gi|2734624|gb|G36957|G36957 SHGC-56642 Human Homo sapiens STS cDNA
           Length = 466
           
 Score = 28.1 bits (55), Expect = 4.1
 Identities = 10/15 (66%), Positives = 11/15 (72%)
 Frame = -3 / -3

                          
Query: 115 LKAPFWPFLFLLRAL 71
           L  PFW FLF L+AL
Sbjct: 242 LSVPFWKFLFYLQAL 198


>gi|4631600|dbj|AU046965.1|AU046965 Rattus norvegicus, OTSUKA clone,
           108a02, microsatellite sequence, sequence tagged site
           Length = 330
           
 Score = 28.1 bits (55), Expect = 4.1
 Identities = 12/39 (30%), Positives = 19/39 (47%)
 Frame = +2 / -3

                                                  
Query: 167 PLTKAHRLFQTSIVFYVTCFTASSQQLLTTAQFSPLQPL 283
           PL    RLF + +  ++ C T     L  +  F P++PL
Sbjct: 211 PLKTQGRLFYSKVSLFLKCRTTLCLFLNVSEGFXPIEPL 95


>gi|4631518|dbj|AU046883.1|AU046883 Rattus norvegicus, OTSUKA clone,
           085f03, microsatellite sequence, sequence tagged site
           Length = 351
           
 Score = 28.1 bits (55), Expect = 4.1
 Identities = 8/26 (30%), Positives = 15/26 (56%)
 Frame = +1 / +3

                                     
Query: 205 CFLCNLFYRIFSAASDHCSIFSFTAI 282
           CF+C L  +I+  A +   +  FT++
Sbjct: 249 CFICKLVLKIYLRAEERTQLIEFTSL 326


>gi|2226478|gb|G33174|G33174 human STS SHGC-6097 clone pG-2470
           Length = 299
           
 Score = 28.1 bits (55), Expect = 4.1
 Identities = 13/38 (34%), Positives = 19/38 (49%)
 Frame = +1 / +2

                                                 
Query: 175 KSA*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVL 288
           +SA +I   HC    +   +FS ASD  S    T ++L
Sbjct: 119 QSAWIIGMSHCAWAVIHCLLFSTASDEKSAVDLTGVLL 232


>gi|938611|gb|G08061|G08061 human STS CHLC.GGAA7E02.P7438 clone
           GGAA7E02
           Length = 338
           
 Score = 27.2 bits (53), Expect = 7.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3 / +3

                                   
Query: 118 WLKAPFWPFLFLLRALHTFPLFLS 47
           WL  PF PFL  L +L   P  LS
Sbjct: 153 WLLFPFLPFLPFLPSLPFLPFLLS 224


>gi|307789|gb|L18105|HUMUT1736 Human STS UT1736.
           Length = 355
           
 Score = 27.2 bits (53), Expect = 7.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3 / -1

                                   
Query: 118 WLKAPFWPFLFLLRALHTFPLFLS 47
           WL  PF PFL  L +L   P  LS
Sbjct: 235 WLLFPFLPFLPFLPSLPFLPFLLS 164


>gi|859804|gb|G06559|G06559 human STS WI-7401.
            Length = 3280
            
 Score = 27.2 bits (53), Expect = 7.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1 / -1

                                 
Query: 339  CCIFFLPGFGVPRLFVHQNNG 277
            C IF++P F    LF+H+  G
Sbjct: 1396 CFIFYVPDFPWSNLFLHRGRG 1334


>gi|4493143|gb|G46852.1|G46852 Z14841_1 Zebrafish AB Danio rerio STS
           genomic clone Z14841 5', sequence tagged site
           Length = 291
           
 Score = 27.2 bits (53), Expect = 7.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3 / +1

                               
Query: 388 NQLWKSILGLXECXFIMLYI 329
           NQ+WK  L +  C F+ +Y+
Sbjct: 37  NQMWKHSLEVCMCVFVYIYV 96


>gi|4492122|gb|G45831.1|G45831 Z4588_1 Zebrafish AB Danio rerio STS
           genomic clone Z4588 5', sequence tagged site
           Length = 398
           
 Score = 27.2 bits (53), Expect = 7.7
 Identities = 7/22 (31%), Positives = 13/22 (58%)
 Frame = +1 / +1

                                 
Query: 205 CFLCNLFYRIFSAASDHCSIFS 270
           CF   + +R+F+    HC+ F+
Sbjct: 13  CFALTVIWRVFAGCRPHCATFT 78


>gi|6121804|gb|G56635.1|G56635 SHGC-102032 Human Homo sapiens STS
           genomic, sequence tagged site
           Length = 541
           
 Score = 27.2 bits (53), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1 / +2

                               
Query: 174 VKGFCISAFSPSQGQFRGCG 115
           V GFC+++FSP +    G G
Sbjct: 125 VDGFCVTSFSPKKDTHPGSG 184


  Database: data/sts
    Posted date:  Nov 26, 1999  5:52 PM
  Number of letters in database: 31,998,854
  Number of sequences in database:  87,792
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 40473548
Number of Sequences: 87792
Number of extensions: 487631
Number of successful extensions: 13175
Number of sequences better than 10.0: 38
length of query: 205
length of database: 10,666,284
effective HSP length: 46
effective length of query: 158
effective length of database: 6,627,852
effective search space: 1047200616
effective search space used: 1047200616
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 52 (26.7 bits)
