skbio.sequence.distance)¶This module contains functions for computing distances between scikit-bio
Sequence objects. These functions can be used directly or supplied to other
parts of the scikit-bio API that accept a sequence distance metric as input,
such as skbio.sequence.Sequence.distance() and
skbio.stats.distance.DistanceMatrix.from_iterable().
hamming(seq1, seq2) |
Compute Hamming distance between two sequences. |
kmer_distance(seq1, seq2, k[, overlap]) |
Compute the kmer distance between a pair of sequences |