Constant Field Values
Contents
org.jmol.*
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org.jmol.adapter.readers.cif.CifReader Modifier and Type Constant Field Value private static final byteADP_TYPE47private static final byteALT_ID15private static final byteANISO_B1135private static final byteANISO_B1238private static final byteANISO_B1339private static final byteANISO_B2236private static final byteANISO_B2340private static final byteANISO_B3337private static final byteANISO_BETA_1141private static final byteANISO_BETA_1244private static final byteANISO_BETA_1345private static final byteANISO_BETA_2242private static final byteANISO_BETA_2346private static final byteANISO_BETA_3343private static final byteANISO_LABEL20private static final byteANISO_MMCIF_ID21private static final byteANISO_MMCIF_U1128private static final byteANISO_MMCIF_U1231private static final byteANISO_MMCIF_U1332private static final byteANISO_MMCIF_U2229private static final byteANISO_MMCIF_U2333private static final byteANISO_MMCIF_U3330private static final byteANISO_U1122private static final byteANISO_U1225private static final byteANISO_U1326private static final byteANISO_U2223private static final byteANISO_U2327private static final byteANISO_U3324private static final byteASYM_ID59private static final byteATOM_ID70private static final byteATOM_TYPE_OXIDATION_NUMBER1private static final byteATOM_TYPE_SYMBOL0private static final byteAUTH_ASYM_ID12private static final byteAUTH_ATOM2private static final byteAUTH_SEQ_ID13private static final byteB_ISO10private static final byteCARTN_X6private static final byteCARTN_Y7private static final byteCARTN_Z8private static final byteCC_ATOM_CHARGE51private static final byteCC_ATOM_ID49private static final byteCC_ATOM_SYM50private static final byteCC_ATOM_X52private static final byteCC_ATOM_X_IDEAL55private static final byteCC_ATOM_Y53private static final byteCC_ATOM_Y_IDEAL56private static final byteCC_ATOM_Z54private static final byteCC_ATOM_Z_IDEAL57private static final byteCC_COMP_ID48private static final byteCCDC_GEOM_BOND_TYPE3private static final byteCITATION_TITLE0private static final byteCOMP_ID11private static final byteDISORDER_ASSEMBLY58private static final byteDISORDER_GROUP19private static final byteDUMMY_ATOM18protected static final java.lang.StringFAMILY_ATOM"_atom_site"private static final java.lang.StringFAMILY_SGOP"_space_group_symop"private static final byteFRACT_X3private static final byteFRACT_Y4private static final byteFRACT_Z5private static final byteGEOM_BOND_ATOM_SITE_LABEL_10private static final byteGEOM_BOND_ATOM_SITE_LABEL_21private static final byteGEOM_BOND_DISTANCE2private static final byteGROUP_PDB16private static final byteINS_CODE14private static final byteLABEL1private static final byteMODEL_NO17private static final byteMOMENT_LABEL63private static final byteMOMENT_PRELIM_X64private static final byteMOMENT_PRELIM_Y65private static final byteMOMENT_PRELIM_Z66private static final byteMOMENT_X67private static final byteMOMENT_Y68private static final byteMOMENT_Z69protected static final byteNONE-1private static final byteOCCUPANCY9private static final byteSEQ_ID71private static final byteSITE_MULT61private static final byteSUBSYS_ID60private static final byteSYM_EQ_XYZ4private static final byteSYM_MAGN_CENTERING9private static final byteSYM_MAGN_REV7private static final byteSYM_MAGN_REV_PRELIM6private static final byteSYM_MAGN_SSG_ALG3private static final byteSYM_MAGN_SSG_CENT_XYZ11private static final byteSYM_MAGN_SSG_CENTERING10private static final byteSYM_MAGN_SSG_REV8private static final byteSYM_MAGN_XYZ1private static final byteSYM_SSG_ALG2private static final byteSYM_SSG_EQ_XYZ5private static final byteSYM_XYZ0private static final byteTHERMAL_TYPE62private static final java.lang.StringtitleRecords"__citation_title__publ_section_title__active_magnetic_irreps_details__"private static final byteTYPE_SYMBOL0private static final byteU_ISO_OR_EQUIV34 -
org.jmol.adapter.readers.cif.MessagePackReader Modifier and Type Constant Field Value private static final intARRAY16220private static final intARRAY32221private static final intBIN16197private static final intBIN32198private static final intBIN8196private static final intDEFINITE_xE0192private static final intEXT16200private static final intEXT32201private static final intEXT8199private static final intFALSE194private static final intFIXEXT1212private static final intFIXEXT16216private static final intFIXEXT2213private static final intFIXEXT4214private static final intFIXEXT8215private static final intFIXMAP_xF0128private static final intFIXSTR_xE0160private static final intFLOAT32202private static final intFLOAT64203private static final intINT16209private static final intINT32210private static final intINT64211private static final intINT8208private static final intMAP16222private static final intMAP32223private static final intNEGATIVEFIXINT_xE0224private static final intNIL192private static final intPOSITIVEFIXINT_x80128private static final intSTR16218private static final intSTR32219private static final intSTR8217private static final intTRUE195private static final intUINT16205private static final intUINT32206private static final intUINT64207private static final intUINT8204 -
org.jmol.adapter.readers.cif.MMCifReader Modifier and Type Constant Field Value private static final byteASSEM_ID0private static final byteASSEM_LIST2private static final byteASSEM_OPERS1private static final byteBEG_ASYM_ID1private static final byteBEG_INS_CODE3private static final byteBEG_SEQ_ID2private static final byteCHEM_COMP_BOND_AROMATIC_FLAG4private static final byteCHEM_COMP_BOND_ATOM_ID_11private static final byteCHEM_COMP_BOND_ATOM_ID_22private static final byteCHEM_COMP_BOND_ID0private static final byteCHEM_COMP_BOND_VALUE_ORDER3private static final byteCHEM_COMP_ID0private static final byteCHEM_COMP_NAME1private static final byteCONF_TYPE_ID0private static final byteEND_ASYM_ID4private static final byteEND_INS_CODE6private static final byteEND_SEQ_ID5private static final java.lang.StringFAMILY_ASSEM_CAT"_pdbx_struct_assembly_gen."private static final java.lang.StringFAMILY_CHEMCOMP_CAT"_chem_comp."private static final java.lang.StringFAMILY_COMPBOND"_chem_comp_bond"private static final java.lang.StringFAMILY_COMPBOND_CAT"_chem_comp_bond."private static final java.lang.StringFAMILY_NCS"_struct_ncs_oper"private static final java.lang.StringFAMILY_NCS_CAT"_struct_ncs_oper."private static final java.lang.StringFAMILY_OPER"_pdbx_struct_oper_list"private static final java.lang.StringFAMILY_OPER_CAT"_pdbx_struct_oper_list."private static final java.lang.StringFAMILY_SEQUENCEDIF_CAT"_struct_ref_seq_dif."private static final java.lang.StringFAMILY_SHEET"_struct_sheet_range"private static final java.lang.StringFAMILY_SHEET_CAT"_struct_sheet_range."private static final java.lang.StringFAMILY_STRUCSITE"_struct_site_gen"private static final java.lang.StringFAMILY_STRUCSITE_CAT"_struct_site_gen."private static final java.lang.StringFAMILY_STRUCTCONF"_struct_conf"private static final java.lang.StringFAMILY_STRUCTCONF_CAT"_struct_conf."private static final java.lang.StringFAMILY_STRUCTCONN"_struct_conn"private static final java.lang.StringFAMILY_STRUCTCONN_CAT"_struct_conn."private static final byteHELIX_CLASS9private static final byteOPER_ID12private static final byteOPER_XYZ13private static final byteSERIAL_NO8private static final byteSHEET_ID0private static final byteSITE_ASYM_ID2private static final byteSITE_COMP_ID1private static final byteSITE_ID0private static final byteSITE_INS_CODE4private static final byteSITE_SEQ_ID3private static final byteSTRAND_ID7private static final byteSTRUCT_CONN_ALT14private static final byteSTRUCT_CONN_ALT210private static final byteSTRUCT_CONN_ASYM10private static final byteSTRUCT_CONN_ASYM26private static final byteSTRUCT_CONN_ATOM13private static final byteSTRUCT_CONN_ATOM29private static final byteSTRUCT_CONN_COMP12private static final byteSTRUCT_CONN_COMP28private static final byteSTRUCT_CONN_ORDER13private static final byteSTRUCT_CONN_SEQ11private static final byteSTRUCT_CONN_SEQ27private static final byteSTRUCT_CONN_SYMM15private static final byteSTRUCT_CONN_SYMM211private static final byteSTRUCT_CONN_TYPE12private static final byteSTRUCT_ID7private static final byteSTRUCT_REF_G11private static final byteSTRUCT_REF_G30 -
org.jmol.adapter.readers.cif.MSCifRdr Modifier and Type Constant Field Value private static final intDEPR_FD_COS72private static final intDEPR_FD_SIN73private static final intDEPR_FO_COS74private static final intDEPR_FO_SIN75private static final intDEPR_FU_COS76private static final intDEPR_FU_SIN77private static final intDISP_SAW_AX19private static final intDISP_SAW_AY20private static final intDISP_SAW_AZ21private static final intDISP_SAW_C22private static final intDISP_SAW_W23private static final intDISP_SPEC_LABEL18private static final intFD_ID40private static final intFDP_ID43private static final intFO_ID41private static final intFOP_ID44private static final intFU_ID42private static final intFUP_ID45private static final intFWV_DISP_AXIS12private static final intFWV_DISP_COS14private static final intFWV_DISP_LABEL11private static final intFWV_DISP_MODULUS16private static final intFWV_DISP_PHASE17private static final intFWV_DISP_SEQ_ID13private static final intFWV_DISP_SIN15private static final intFWV_ID0private static final intFWV_OCC_COS26private static final intFWV_OCC_LABEL24private static final intFWV_OCC_MODULUS28private static final intFWV_OCC_PHASE29private static final intFWV_OCC_SEQ_ID25private static final intFWV_OCC_SIN27private static final intFWV_SPIN_AXIS49private static final intFWV_SPIN_COS51private static final intFWV_SPIN_LABEL48private static final intFWV_SPIN_MODULUS53private static final intFWV_SPIN_PHASE54private static final intFWV_SPIN_SEQ_ID50private static final intFWV_SPIN_SIN52private static final intFWV_U_COS36private static final intFWV_U_LABEL33private static final intFWV_U_MODULUS38private static final intFWV_U_PHASE39private static final intFWV_U_SEQ_ID35private static final intFWV_U_SIN37private static final intFWV_U_TENS34private static final intFWV_X5private static final intFWV_Y6private static final intFWV_Z7private static final intJANA_FWV_Q1_COEF8private static final intJANA_FWV_Q2_COEF9private static final intJANA_FWV_Q3_COEF10private static final intJANA_OCC_ABS_LABEL46private static final intJANA_OCC_ABS_O_047private static final intLEG_DISP_AXIS62private static final intLEG_DISP_COEF64private static final intLEG_DISP_LABEL61private static final intLEG_DISP_ORDER63private static final intLEG_OCC_COEF71private static final intLEG_OCC_LABEL69private static final intLEG_OCC_ORDER70private static final intLEG_U_COEF68private static final intLEG_U_LABEL65private static final intLEG_U_ORDER67private static final intLEG_U_TENS66private static final intNONE-1private static final intOCC_CRENEL_C31private static final intOCC_CRENEL_W32private static final intOCC_SPECIAL_LABEL30private static final intSPIN_SAW_AX56private static final intSPIN_SAW_AY57private static final intSPIN_SAW_AZ58private static final intSPIN_SAW_C59private static final intSPIN_SAW_W60private static final intSPIN_SPEC_LABEL55private static final intWV_ID1private static final intWV_X2private static final intWV_Y3private static final intWV_Z4 -
org.jmol.adapter.readers.cif.MSRdr Modifier and Type Constant Field Value private static final java.lang.StringU_LIST"U11U22U33U12U13U23UISO"
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org.jmol.adapter.readers.more.ForceFieldReader Modifier and Type Constant Field Value private static final java.lang.StringffTypes" CA CB CC CD CE CF CG CH CI CJ CK CM CN CP CQ CR CT CV CW HA HP HC HO HS HW LP NA NB NC NT OH OS OW SH AH BH HT HY AC BC CS OA OB OE OT dw hc hi hn ho hp hs hw hscp htip ca cg ci cn co coh cp cr cs ct c3h c3m c4h c4m na nb nh nho nh+ ni nn np npc nr nt nz oc oe oh op oscp otip sc sh sp br cl ca+ ar si lp nu sz oz az pz ga ge tioc titd li+ na+ rb+ cs+ mg2+ ca2+ ba2+ cu2+ cl- br- so4 sy oy ay ayt nac+ mg2c fe2c mn4c mn3c co2c ni2c lic+ pd2+ ti4c sr2c ca2c cly- hocl py vy nh4+ so4y lioh naoh koh foh cloh beoh al CE1 CF1 CF2 CF3 CG CD2 CH1E CH2E CH3E CM CP3 CPH1 CPH2 CQ66 CR55 CR56 CR66 CS66 CT CT3 CT4 CUA1 CUA2 CUA3 CUY1 CUY2 HA HC HMU HO HT LP NC NC2 NO2 NP NR1 NR2 NR3 NR55 NR56 NR66 NT NX OA OAC OC OE OH2 OK OM OS OSH OSI OT OW PO3 PO4 PT PUA1 PUY1 SE SH1E SK SO1 SO2 SO3 SO4 ST ST2 ST2 br br- br1 cl cl- cl1 cl12 cl13 cl14 cl1p ca+ cu+2 fe+2 mg+2 zn+2 cs+ li+ na+ rb+ al4z si si4 si4c si4z ar he kr ne xe dw hi hw ca cg ci co coh cp cr cs ct ct3 na nb nh nho ni no np nt nt2 nz oa oc oh op os ot sp bt cl\' si4l si5l si5t si6 si6o si\' br ca cc cd ce cf cl cp cq cu cv cx cy ha hc hn ho hp hs na nb nc nd nh oh os pb pc pd pe pf px py sh ss sx sy hn2 ho2 cz oo oz si sio hsi osi "private static final java.lang.StringsecondCharOnly" AH BH AC BC "private static final java.lang.StringspecialTypes" IM IP sz az sy ay ayt "private static final java.lang.StringtwoChar" al al4z ar ba2+ beoh br br- br1 ca+ ca2+ ca2c cl cl\' cl- cl1 cl12 cl13 cl14 cl1p cloh cly- co2c cs+ cu+2 cu2+ fe+2 fe2c ga ge he kr li+ lic+ lioh lp LP mg+2 mg2+ mg2c mn3c mn4c na+ nac+ naoh ne ni2c nu pd2+ rb+ si si\' si4 si4c si4l si4z si5l si5t si6 si6o sio sr2c ti4c tioc titd xe zn+2 "
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org.jmol.adapter.readers.pdb.PdbReader Modifier and Type Constant Field Value private static final float_8PI2_78.95683288574219fprivate static final java.lang.StringlineOptions"ATOM HETATM MODEL CONECT HELIX SHEET TURN HET HETNAM ANISOU SITE CRYST1 SCALE1 SCALE2 SCALE3 EXPDTA FORMUL REMARK HEADER COMPND SOURCE TITLE SEQADV "private static final intMODE_HEX1private static final intMODE_HYBRID362private static final intMODE_PDB0private static final floatRAD_PER_DEG0.01745329238474369f
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org.jmol.adapter.readers.pymol.org.jmol.adapter.readers.pymol.PickleReader Modifier and Type Constant Field Value private static final byteAPPEND97private static final byteAPPENDS101private static final byteBINFLOAT71private static final byteBINGET104private static final byteBININT74private static final byteBININT175private static final byteBININT277private static final byteBINPUT113private static final byteBINSTRING84private static final byteBINUNICODE87private static final byteBUILD98private static final byteEMPTY_DICT125private static final byteEMPTY_LIST93private static final byteGLOBAL99private static final byteINT73private static final byteLONG_BINGET106private static final byteLONG_BINPUT114private static final byteMARK40private static final byteNONE78private static final byteOBJ111private static final byteSETITEM115private static final byteSETITEMS117private static final byteSHORT_BINSTRING85private static final byteSTOP46private static final byteTUPLE116 -
org.jmol.adapter.readers.pymol.org.jmol.adapter.readers.pymol.PyMOL Modifier and Type Constant Field Value static final intactive_selections351static final intalignment_as_cylinders692static final intall_states49static final intALTLOC40static final intambient7static final intambient_occlusion_mode702static final intambient_occlusion_scale703static final intambient_occlusion_smooth704static final intanaglyph_mode706static final intangle_color575static final intangle_label_position406static final intangle_size405static final intanimation388static final intanimation_duration389static final intANISOU45static final intantialias12static final intasync_builds506static final intati_bugs585static final intatom_name_wildcard413static final intatom_type_format660static final intauto_classify_atoms360static final intauto_color238static final intauto_color_next239static final intauto_copy_images557static final intauto_defer_atom_count653static final intauto_defer_builds567static final intauto_dss323static final intauto_hide_selections79static final intauto_indicate_flags147static final intauto_number_selections443static final intauto_overlay603static final intauto_remove_hydrogens158static final intauto_rename_duplicate_objects561static final intauto_sculpt162static final intauto_show_lines51static final intauto_show_nonbonded72static final intauto_show_selections78static final intauto_show_spheres420static final intauto_zoom60static final intautoclose_dialogs661static final intbackface_cull75static final intbatch_prefix187static final intBATOM11static final intBATOM22static final intBFACTOR4static final intbg_gradient662static final intbg_image_filename712static final intbg_image_linear715static final intbg_image_mode713static final intbg_image_tilesize714static final intbg_rgb6static final intbg_rgb_bottom664static final intbg_rgb_top663static final intBHASSETTING6static final intBID4static final intBONDED22static final intbonding_vdw_cutoff0static final intBONMASK47static final intBORDER3static final intBUNIQUEID5static final intbutton_mode63static final intbutton_mode_name330static final intcache_display73static final intcache_frames31static final intcache_max578static final intcache_memory264static final intcache_mode573static final intCARTOON30static final intcartoon_color236static final intcartoon_cylindrical_helices180static final intcartoon_debug105static final intcartoon_discrete_colors125static final intcartoon_dumbbell_length115static final intcartoon_dumbbell_radius117static final intcartoon_dumbbell_width116static final intcartoon_fancy_helices118static final intcartoon_fancy_sheets119static final intcartoon_flat_cycles260static final intcartoon_flat_sheets113static final intcartoon_helix_radius181static final intcartoon_highlight_color241static final intcartoon_ladder_color450static final intcartoon_ladder_mode448static final intcartoon_ladder_radius449static final intcartoon_loop_cap432static final intcartoon_loop_quality93static final intcartoon_loop_radius92static final intcartoon_nucleic_acid_as_cylinders693static final intcartoon_nucleic_acid_color451static final intcartoon_nucleic_acid_mode361static final intcartoon_oval_length100static final intcartoon_oval_quality102static final intcartoon_oval_width101static final intcartoon_power94static final intcartoon_power_b95static final intcartoon_putty_quality378static final intcartoon_putty_radius377static final intcartoon_putty_range382static final intcartoon_putty_scale_max380static final intcartoon_putty_scale_min379static final intcartoon_putty_scale_power381static final intcartoon_putty_transform581static final intcartoon_rect_length96static final intcartoon_rect_width97static final intcartoon_refine123static final intcartoon_refine_normals112static final intcartoon_refine_tips124static final intcartoon_ring_color429static final intcartoon_ring_finder430static final intcartoon_ring_mode427static final intcartoon_ring_radius508static final intcartoon_ring_transparency452static final intcartoon_ring_width428static final intcartoon_round_helices111static final intcartoon_sampling91static final intcartoon_side_chain_helper383static final intcartoon_smooth_cycles259static final intcartoon_smooth_first257static final intcartoon_smooth_last258static final intcartoon_smooth_loops114static final intcartoon_throw122static final intcartoon_trace_atoms269static final intcartoon_transparency279static final intcartoon_tube_cap431static final intcartoon_tube_quality104static final intcartoon_tube_radius103static final intcartoon_use_shader643static final intcavity_cull13static final intcgo_debug674static final intcgo_dot_radius303static final intcgo_dot_width302static final intcgo_ellipsoid_quality564static final intcgo_lighting671static final intcgo_line_radius130static final intcgo_line_width129static final intcgo_ray_width_scale109static final intcgo_shader_ub_color669static final intcgo_shader_ub_flags694static final intcgo_shader_ub_normal670static final intcgo_sphere_quality189static final intcgo_transparency441static final intcgo_use_shader668static final intCHAIN34static final intCHEMFLAG43static final intclamp_colors214static final intclean_electro_mode615static final intCOLOR9static final intCOLOR_BACK-7static final intCOLOR_BLACK1static final intCOLOR_FRONT-6static final intcone_quality583static final intconnect_bonded487static final intconnect_cutoff182static final intconnect_mode179static final intcoulomb_cutoff367static final intcoulomb_dielectric243static final intcoulomb_units_factor242static final intcull_spheres33static final intCUSTOM18static final intCUSTOMTYPE2static final intcylinder_shader_ff_workaround697static final intcylinders_shader_filter_faces687static final intdash_as_cylinders684static final intdash_color574static final intdash_gap59static final intdash_length58static final intdash_radius108static final intdash_round_ends280static final intdash_use_shader683static final intdash_width107static final intdebug_pick209static final intdefault_2fofc_map_rep659static final intdefault_buster_names657static final intdefault_fofc_map_rep658static final intdefault_phenix_names655static final intdefault_phenix_no_fill_names656static final intdefault_refmac_names654static final intdefer_builds_mode409static final intdefer_updates304static final intdepth_cue84static final intdihedral_color576static final intdihedral_label_position408static final intdihedral_size407static final intdirect8static final intDISCRETESTATE14static final intdist_counter57static final intdistance_exclusion460static final intdot_as_spheres701static final intdot_color210static final intdot_density2static final intdot_hydrogens28static final intdot_lighting336static final intdot_mode3static final intdot_normals332static final intdot_radius29static final intdot_solvent206static final intdot_use_shader700static final intdot_width77static final intdraw_frames436static final intdraw_mode614static final intdump_binary749static final intdynamic_measures637static final intdynamic_width610static final intdynamic_width_factor611static final intdynamic_width_max613static final intdynamic_width_min612static final intedit_light707static final inteditor_auto_dihedral416static final inteditor_auto_origin439static final inteditor_bond_cycle_mode633static final inteditor_label_fragments321static final intELECRADIUS15static final intELEM37static final intellipsoid_color570static final intellipsoid_probability568static final intellipsoid_quality563static final intellipsoid_scale569static final intellipsoid_transparency571static final intexcl_display_lists_shaders682static final intfast_idle54static final intfetch_host636static final intfetch_path507static final intfield_of_view152static final intfit_iterations185static final intfit_kabsch608static final intfit_tolerance186static final intFLAGS11static final intfloat_labels232static final intfog88static final intfog_start192static final intFORMALCHARGE28static final intframe194static final intfull_screen142static final intgamma76static final intgaussian_b_adjust255static final intgaussian_b_floor272static final intgaussian_resolution271static final intGEOM31static final intgeometry_export_mode586static final intgl_ambient14static final intgradient_max_length539static final intgradient_min_length540static final intgradient_min_slope541static final intgradient_normal_min_dot542static final intgradient_spacing544static final intgradient_step_size543static final intgradient_symmetry545static final intgrid_max580static final intgrid_mode577static final intgrid_slot579static final intgroup_arrow_prefix547static final intgroup_auto_mode537static final intgroup_full_member_names538static final inth_bond_cone286static final inth_bond_cutoff_center282static final inth_bond_cutoff_edge283static final inth_bond_exclusion461static final inth_bond_from_proton556static final inth_bond_max_angle281static final inth_bond_power_a284static final inth_bond_power_b285static final inthalf_bonds45static final inthash_max22static final intHASSETTING27static final intHBACCEPT26static final intHBAMASK50static final intHBDMASK49static final intHBDONOR25static final intheavy_neighbor_cutoff639static final intHETATM21static final intHETMASK46static final inthide_long_bonds560static final inthide_underscore_names458static final intID10static final intidle_delay52static final intignore_case414static final intignore_pdb_segi120static final intimage_copy_always601static final intimage_dots_per_inch434static final intINIT710static final intINSCODE42static final intinternal_feedback128static final intinternal_gui99static final intinternal_gui_control_size322static final intinternal_gui_mode341static final intinternal_gui_width98static final intinternal_prompt313static final intisomesh_auto_state89static final intkeep_alive607static final intLABEL19static final intlabel_anchor635static final intlabel_angle_digits531static final intlabel_color66static final intlabel_digits529static final intlabel_dihedral_digits532static final intlabel_distance_digits530static final intlabel_font_id328static final intlabel_outline_color467static final intlabel_position471static final intlabel_shadow_mode462static final intlabel_size453static final intlegacy_mouse_zoom442static final intlegacy_vdw_radii177static final intLEN0static final intlight10static final intlight_count455static final intlight2456static final intlight3457static final intlight4463static final intlight5464static final intlight6465static final intlight7466static final intlight8489static final intlight9490static final intline_as_cylinders679static final intline_color526static final intline_radius110static final intline_smooth43static final intline_stick_helper391static final intline_use_shader645static final intline_width44static final intlog_box_selections133static final intlog_conformations134static final intlogging131static final intmap_auto_expand_sym600static final intMASK24static final intMASMASK48static final intmatrix_mode438static final intmax_threads261static final intmax_triangles83static final intmax_ups602static final intmesh_as_cylinders678static final intmesh_carve_cutoff591static final intmesh_carve_selection589static final intmesh_carve_state590static final intmesh_clear_cutoff594static final intmesh_clear_selection592static final intmesh_clear_state593static final intmesh_color146static final intmesh_cutoff588static final intmesh_grid_max595static final intmesh_lighting337static final intmesh_mode145static final intmesh_negative_color536static final intmesh_negative_visible535static final intmesh_normals334static final intmesh_quality204static final intmesh_radius74static final intmesh_skip528static final intmesh_solvent205static final intmesh_type335static final intmesh_use_shader672static final intmesh_width90static final intmin_mesh_spacing1static final intMMSTEREO29static final intmoe_separate_chains558static final intmotion_bias628static final intmotion_hand631static final intmotion_linear630static final intmotion_power627static final intmotion_simple629static final intmouse_grid587static final intmouse_limit211static final intmouse_restart_movie_delay404static final intmouse_scale212static final intmouse_selection_mode354static final intmouse_wheel_scale523static final intmouse_z_scale619static final intmovie_animate_by_frame565static final intmovie_auto_interpolate621static final intmovie_auto_store620static final intmovie_delay16static final intmovie_fps550static final intmovie_loop299static final intmovie_panel618static final intmovie_panel_row_height622static final intmovie_quality634static final intmovie_rock572static final intmultiplex385static final intNAME36static final intnb_spheres_quality689static final intnb_spheres_size688static final intnb_spheres_use_shader690static final intneighbor_cutoff638static final intno_idle53static final intnonbonded_as_cylinders686static final intnonbonded_size65static final intnonbonded_transparency524static final intnonbonded_use_shader685static final intnormal_workaround40static final intnormalize_ccp4_maps126static final intnormalize_grd_maps314static final intnormalize_o_maps305static final intnvidia_bugs433static final intOBJECT_ALIGNMENT11static final intOBJECT_CALCULATOR9static final intOBJECT_CALLBACK5static final intOBJECT_CGO6static final intOBJECT_GADGET8static final intOBJECT_GROUP12static final intOBJECT_MAPDATA2static final intOBJECT_MAPMESH3static final intOBJECT_MEASURE4static final intOBJECT_MOLECULE1static final intOBJECT_SELECTION-1static final intOBJECT_SLICE10static final intOBJECT_SURFACE7static final intOCCUPANCY5static final intoffscreen_rendering_for_antialiasing695static final intoffscreen_rendering_multiplier696static final intopaque_background435static final intorthoscopic23static final intoverlay61static final intoverlay_lines311static final intPARTIALCHARGE7static final intpdb_conect_all329static final intpdb_discrete_chains479static final intpdb_echo_tags486static final intpdb_formal_charges584static final intpdb_hetatm_guess_valences562static final intpdb_hetatm_sort267static final intpdb_honor_model_number424static final intpdb_ignore_conect632static final intpdb_insertions_go_first307static final intpdb_insure_orthogonal374static final intpdb_literal_names190static final intpdb_no_end_record301static final intpdb_reformat_names_mode326static final intpdb_retain_ids300static final intpdb_standard_order256static final intpdb_truncate_residue_name399static final intpdb_unbond_cations480static final intpdb_use_ter_records268static final intpickable50static final intpng_file_gamma320static final intpng_screen_gamma319static final intpolar_neighbor_cutoff640static final intpower11static final intpqr_workarounds387static final intpresentation397static final intpresentation_auto_quit415static final intpresentation_auto_start417static final intpresentation_mode398static final intpreserve_chempy_ids154static final intPRIORITY3static final intPROTEKTED44static final intPROTONS33static final intpymol_space_max_blue217static final intpymol_space_max_green216static final intpymol_space_max_red215static final intpymol_space_min_factor218static final intraise_exceptions159static final intramp_blend_nearby_colors566static final intRANK16static final intrank_assisted_sorts425static final intray_blend_blue318static final intray_blend_colors315static final intray_blend_green317static final intray_blend_red316static final intray_clip_shadows522static final intray_color_ramps509static final intray_default_renderer151static final intray_direct_shade375static final intray_hint_camera510static final intray_hint_shadow511static final intray_improve_shadows149static final intray_interior_color240static final intray_interior_mode476static final intray_interior_reflect340static final intray_interior_shadows244static final intray_interior_texture245static final intray_label_specular527static final intray_legacy_lighting477static final intray_max_passes350static final intray_opaque_background137static final intray_orthoscopic392static final intray_oversample_cutoff270static final intray_pixel_scale327static final intray_scatter555static final intray_shadow_decay_factor475static final intray_shadow_decay_range491static final intray_shadow_fudge207static final intray_shadows195static final intray_spec_local525static final intray_texture139static final intray_texture_settings140static final intray_trace_color546static final intray_trace_depth_factor472static final intray_trace_disco_factor474static final intray_trace_fog67static final intray_trace_fog_start69static final intray_trace_frames30static final intray_trace_gain469static final intray_trace_mode468static final intray_trace_persist_cutoff553static final intray_trace_slope_factor473static final intray_trace_trans_cutoff552static final intray_transparency_contrast352static final intray_transparency_oblique551static final intray_transparency_oblique_power554static final intray_transparency_shadows199static final intray_transparency_spec_cut312static final intray_transparency_specular201static final intray_triangle_fudge208static final intray_volume665static final intreflect9static final intreflect_power153static final intrender_as_cylinders691static final intREP_ANGLES17static final intREP_CALLBACK14static final intREP_CARTOON5static final intREP_CELL12static final intREP_CGO13static final intREP_DASHES10static final intREP_DIHEDRALS18static final intREP_DOTS9static final intREP_ELLIPSOID19static final intREP_EXTENT15static final intREP_JMOL_MAX23static final intREP_JMOL_PUTTY22static final intREP_JMOL_TRACE21static final intREP_LABELS3static final intREP_LINES7static final intREP_MAX21static final intREP_MESH8static final intREP_NBSPHERES4static final intREP_NONBONDED11static final intREP_RIBBON6static final intREP_SLICE16static final intREP_SPHERES1static final intREP_STICKS0static final intREP_SURFACE2static final intREP_VOLUME20static final intRESI38static final intRESN41static final intRESV1static final intretain_order266static final intribbon_as_cylinders680static final intribbon_color235static final intribbon_nucleic_acid_mode426static final intribbon_power17static final intribbon_power_b18static final intribbon_radius20static final intribbon_sampling19static final intribbon_side_chain_helper393static final intribbon_smooth237static final intribbon_throw121static final intribbon_trace_atoms196static final intribbon_transparency666static final intribbon_use_shader681static final intribbon_width106static final introbust_logs132static final introck582static final introck_delay56static final introving_byres226static final introving_cartoon228static final introving_delay224static final introving_detail233static final introving_isomesh252static final introving_isosurface253static final introving_labels223static final introving_lines220static final introving_map1_level249static final introving_map1_name246static final introving_map2_level250static final introving_map2_name247static final introving_map3_level251static final introving_map3_name248static final introving_nb_spheres234static final introving_nonbonded231static final introving_origin219static final introving_origin_z308static final introving_origin_z_cushion309static final introving_polar_contacts229static final introving_polar_cutoff230static final introving_ribbon227static final introving_selection225static final introving_spheres222static final introving_sticks221static final intsave_pdb_ss183static final intscene_animation390static final intscene_animation_duration411static final intscene_buttons599static final intscene_buttons_mode598static final intscene_current_name396static final intscene_frame_mode623static final intscene_loop400static final intscene_restart_movie_delay403static final intscenes_changed254static final intsculpt_angl_weight168static final intsculpt_auto_center478static final intsculpt_avd_excl505static final intsculpt_avd_gap503static final intsculpt_avd_range504static final intsculpt_avd_weight502static final intsculpt_bond_weight167static final intsculpt_field_mask174static final intsculpt_hb_overlap175static final intsculpt_hb_overlap_base176static final intsculpt_line_weight184static final intsculpt_max_max500static final intsculpt_max_min499static final intsculpt_max_scale497static final intsculpt_max_weight498static final intsculpt_memory178static final intsculpt_min_max496static final intsculpt_min_min495static final intsculpt_min_scale493static final intsculpt_min_weight494static final intsculpt_nb_interval273static final intsculpt_plan_weight170static final intsculpt_pyra_inv_weight606static final intsculpt_pyra_weight169static final intsculpt_tors_tolerance275static final intsculpt_tors_weight274static final intsculpt_tri_max484static final intsculpt_tri_min483static final intsculpt_tri_mode485static final intsculpt_tri_scale481static final intsculpt_tri_weight482static final intsculpt_vdw_scale163static final intsculpt_vdw_scale14164static final intsculpt_vdw_vis_max447static final intsculpt_vdw_vis_mid446static final intsculpt_vdw_vis_min445static final intsculpt_vdw_vis_mode444static final intsculpt_vdw_weight165static final intsculpt_vdw_weight14166static final intsculpting161static final intsculpting_cycles171static final intsdof_drag_scale597static final intsecondary_structure157static final intsecurity197static final intSEGI35static final intsel_counter5static final intselection_overlay81static final intselection_round_points459static final intselection_visible_only470static final intselection_width80static final intselection_width_max394static final intselection_width_scale395static final intseq_view353static final intseq_view_alignment513static final intseq_view_color362static final intseq_view_discrete_by_state410static final intseq_view_fill_char516static final intseq_view_fill_color517static final intseq_view_format357static final intseq_view_label_color518static final intseq_view_label_mode363static final intseq_view_label_spacing355static final intseq_view_label_start356static final intseq_view_location358static final intseq_view_overlay359static final intseq_view_unaligned_color515static final intseq_view_unaligned_mode514static final intsession_cache_optimize596static final intsession_changed521static final intsession_compression549static final intsession_file440static final intsession_migration333static final intsession_version_check200static final intSETMASK51static final intshader_path648static final intshininess86static final intshow_alpha_checker437static final intshow_frame_rate617static final intshow_progress262static final intsimplify_display_lists265static final intsingle_image15static final intslice_dynamic_grid372static final intslice_dynamic_grid_resolution373static final intslice_grid371static final intslice_height_map370static final intslice_height_scale369static final intslice_track_camera368static final intslow_idle55static final intsmooth_color_triangle150static final intsmooth_half_bonds705static final intsolvent_radius4static final intspec_count492static final intspec_direct454static final intspec_direct_power488static final intspec_power25static final intspec_reflect24static final intspecular85static final intspecular_intensity310static final intsphere_color173static final intsphere_mode421static final intsphere_point_max_size422static final intsphere_point_size423static final intsphere_quality87static final intsphere_scale155static final intsphere_solvent203static final intsphere_transparency172static final intsphere_use_shader646static final intspheroid_fill71static final intspheroid_scale68static final intspheroid_smooth70static final intss_helix_phi_exclude292static final intss_helix_phi_include291static final intss_helix_phi_target290static final intss_helix_psi_exclude289static final intss_helix_psi_include288static final intss_helix_psi_target287static final intss_strand_phi_exclude298static final intss_strand_phi_include297static final intss_strand_phi_target296static final intss_strand_psi_exclude295static final intss_strand_psi_include294static final intss_strand_psi_target293static final intSSTYPE39static final intstate193static final intstate_counter_mode667static final intstatic_singletons82static final intstereo365static final intstereo_angle41static final intstereo_double_pump_mono202static final intstereo_dynamic_strength609static final intstereo_mode188static final intstereo_shift42static final intstick_as_cylinders677static final intstick_ball276static final intstick_ball_color604static final intstick_ball_ratio277static final intstick_color376static final intstick_debug673static final intstick_fixed_radius278static final intstick_good_geometry676static final intstick_h_scale605static final intstick_nub48static final intstick_overlap47static final intstick_quality46static final intstick_radius21static final intstick_round_nub675static final intstick_transparency198static final intstick_use_shader644static final intstick_valence_scale512static final intstop_on_exceptions160static final intsuppress_hidden548static final intsurface_best36static final intsurface_carve_cutoff344static final intsurface_carve_normal_cutoff519static final intsurface_carve_selection342static final intsurface_carve_state343static final intsurface_cavity_cutoff626static final intsurface_cavity_mode624static final intsurface_cavity_radius625static final intsurface_circumscribe501static final intsurface_clear_cutoff347static final intsurface_clear_selection345static final intsurface_clear_state346static final intsurface_color144static final intsurface_color_smoothing698static final intsurface_color_smoothing_threshold699static final intsurface_debug148static final intsurface_miserable136static final intsurface_mode143static final intsurface_negative_color534static final intsurface_negative_visible533static final intsurface_normal37static final intsurface_optimize_subsets384static final intsurface_poor127static final intsurface_proximity39static final intsurface_quality38static final intsurface_ramp_above_mode364static final intsurface_residue_cutoff641static final intsurface_solvent338static final intsurface_trim_cutoff348static final intsurface_trim_factor349static final intsurface_type331static final intsurface_use_shader642static final intsuspend_undo708static final intsuspend_undo_atom_count709static final intsuspend_updates141static final intswap_dsn6_bytes306static final intsweep_angle26static final intsweep_mode401static final intsweep_phase402static final intsweep_speed27static final inttest134static final inttest235static final inttext62static final intTEXTTYPE17static final inttexture_fonts386static final inttrace_atoms_mode520static final inttransparency138static final inttransparency_global_sort559static final inttransparency_mode213static final inttransparency_picking_mode324static final inttriangle_max_passes339static final inttrim_dots32static final inttwo_sided_lighting156static final intUNIQUEID13static final intunused_boolean_def_true419static final intuse_display_lists263static final intuse_shaders647static final intvalence64static final intVALENCE32static final intvalence_mode616static final intvalence_size135static final intvalidate_object_names418static final intVDW6static final intvirtual_trackball325static final intVISREP20static final intvolume_bit_depth649static final intvolume_color650static final intvolume_data_range652static final intvolume_layers651static final intwildcard412static final intwizard_prompt_mode366static final intwrap_output191 -
org.jmol.adapter.readers.pymol.PyMOLReader Modifier and Type Constant Field Value private static final intMIN_RESNO-1000
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org.jmol.adapter.readers.quantum.CsfReader Modifier and Type Constant Field Value private static final byteANUM2private static final byteBFXN_ANGL6private static final byteBTYPE1private static final byteCHRG3private static final byteCOEF_INDICES5private static final byteCONTRACTIONS8private static final byteDIPOLE3private static final byteEIG_VAL1private static final byteEIG_VEC3private static final byteEIG_VEC_COMPRESSED4private static final byteGTO_EXP9private static final byteID-1private static final byteMO_OCC2private static final byteNORMAL_MODE1private static final byteobjCls11private static final byteobjCls23private static final byteobjID12private static final byteobjID24private static final bytePCHRG5private static final byteSHELL10private static final byteSTO_EXP7private static final byteSYM1private static final byteVIB_ENERGY2private static final byteXYZ4 -
org.jmol.adapter.readers.quantum.GaussianReader Modifier and Type Constant Field Value private static final intSTD_ORIENTATION_ATOMIC_NUMBER_OFFSET1 -
org.jmol.adapter.readers.quantum.JaguarReader Modifier and Type Constant Field Value private static final floatROOT31.7320507764816284f -
org.jmol.adapter.readers.quantum.org.jmol.adapter.readers.quantum.MopacSlaterReader Modifier and Type Constant Field Value protected static final floatMIN_COEF9.999999747378752E-5f -
org.jmol.adapter.readers.quantum.MOReader Modifier and Type Constant Field Value private static final java.lang.StringDC_LIST"(D1) (D4) (D6) (D2) (D3) (D5)"private static final java.lang.StringDS_LIST"(D5) (D2) (D3) (D4) (D1)"private static final java.lang.StringFS_LIST"(F1) (F2) (F3) (F4) (F5) (F6) (F7)"protected final intHEADER_GAMESS_OCCUPANCIES2protected final intHEADER_GAMESS_ORIGINAL1protected final intHEADER_GAMESS_UK_MO3protected final intHEADER_NONE0private static final java.lang.StringP_LIST"(PX) (PY) (PZ)" -
org.jmol.adapter.readers.quantum.org.jmol.adapter.readers.quantum.SlaterReader Modifier and Type Constant Field Value private static final double_1_4pi0.07957747154594767
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org.jmol.adapter.readers.xml.XmlArgusReader Modifier and Type Constant Field Value private static final intATOM2private static final intBOND3private static final intMOLECULE1private static final intTRANSFORMMAT4private static final intUNSET0 -
org.jmol.adapter.readers.xml.XmlCmlReader Modifier and Type Constant Field Value protected static final intASSOCIATION19protected static final intCML1protected static final intCRYSTAL2protected static final intCRYSTAL_SCALAR3protected static final intCRYSTAL_SYMMETRY4protected static final intCRYSTAL_SYMMETRY_TRANSFORM35protected static final intLATTICE_VECTOR18protected static final intMODULE15protected static final intMOLECULE6protected static final intMOLECULE_ATOM8protected static final intMOLECULE_ATOM_ARRAY7protected static final intMOLECULE_ATOM_BUILTIN13protected static final intMOLECULE_ATOM_SCALAR9protected static final intMOLECULE_BOND11protected static final intMOLECULE_BOND_ARRAY10protected static final intMOLECULE_BOND_BUILTIN14protected static final intMOLECULE_FORMULA12protected static final intSTART0protected static final intSYMMETRY17
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org.jmol.adapter.readers.xtal.CastepReader Modifier and Type Constant Field Value private static final floatRAD_TO_DEG57.295780181884766fprivate static final doubleTWOPI6.283185307179586 -
org.jmol.adapter.readers.xtal.CgdReader Modifier and Type Constant Field Value private static final java.lang.StringSG_ALIASES";P2=P121;P21=P1211;C2=C121;A2=A121;I2=I121;Pm=P1m1;Pc=P1c1;Pn=P1n1;Pa=P1a1;Cm=C1m1;Am=A1m1;Im=I1m1;Cc=C1c1;An=A1n1;Ia=I1a1;Aa=A1a1;Cn=C1n1;Ic=I1c1;P2/m=P12/m1;P21/m=P121/m1;C2/m=C12/m1;A2/m=A12/m1;I2/m=I12/m1;P2/c=P12/c1;P2/n=P12/n1;P2/a=P12/a1;P21/c=P121/c1;P21/n=P121/n1;P21/a=P121/a1;C2/c=C12/c1;A2/n=A12/n1;I2/a=I12/a1;A2/a=A12/a1;C2/n=C12/n1;I2/c=I12/c1;Pm3=Pm-3;Pn3=Pn-3;Fm3=Fm-3;Fd3=Fd-3;Im3=Im-3;Pa3=Pa-3;Ia3=Ia-3;Pm3m=Pm-3m;Pn3n=Pn-3n;Pm3n=Pm-3n;Pn3m=Pn-3m;Fm3m=Fm-3m;Fm3c=Fm-3c;Fd3m=Fd-3m;Fd3c=Fd-3c;Im3m=Im-3m;Ia3d=Ia-3d;" -
org.jmol.adapter.readers.xtal.JanaReader Modifier and Type Constant Field Value static final intCELL5static final intEND35static final intLATT20static final intNDIM10static final intQI15static final java.lang.Stringrecords"tit cell ndim qi lat sym spg end wma"static final intSPG30static final intSYM25static final intTITLE0public static final java.lang.StringU_LIST"U11U22U33U12U13U23UISO"static final intWMATRIX40 -
org.jmol.adapter.readers.xtal.MagresReader Modifier and Type Constant Field Value private static final intBLOCK_ATOMS1private static final intBLOCK_CALC0private static final intBLOCK_MAGRES2private static final intBLOCK_NEW-2private static final intBLOCK_NONE-1 -
org.jmol.adapter.readers.xtal.ShelxReader Modifier and Type Constant Field Value private static final java.lang.StringunsupportedRecordTypes";ZERR;DISP;UNIT;LAUE;REM;MORE;TIME;HKLF;OMIT;SHEL;BASF;TWIN;EXTI;SWAT;HOPE;MERG;SPEC;RESI;MOVE;ANIS;AFIX;HFIX;FRAG;FEND;EXYZ;EXTI;EADP;EQIV;CONN;PART;BIND;FREE;DFIX;DANG;BUMP;SAME;SADI;CHIV;FLAT;DELU;SIMU;DEFS;ISOR;NCSY;SUMP;L.S.;CGLS;BLOC;DAMP;STIR;WGHT;FVAR;BOND;CONF;MPLA;RTAB;HTAB;LIST;ACTA;SIZE;TEMP;WPDB;FMAP;GRID;PLAN;MOLE;" -
org.jmol.adapter.readers.xtal.Wien2kReader Modifier and Type Constant Field Value private final java.lang.Stringcxyz" x y z"
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org.jmol.adapter.smarter.AtomSetCollection Modifier and Type Constant Field Value public static final intGLOBAL_CONECT3public static final intGLOBAL_DOMAINS5public static final intGLOBAL_FRACTCOORD0public static final intGLOBAL_ISPDB4public static final intGLOBAL_SYMMETRY1public static final intGLOBAL_UNITCELLS2public static final intGLOBAL_VALIDATIONS6 -
org.jmol.adapter.smarter.AtomSetCollectionReader Modifier and Type Constant Field Value public static final floatANGSTROMS_PER_BOHR0.529177188873291f -
org.jmol.adapter.smarter.Resolver Modifier and Type Constant Field Value private static final java.lang.StringclassBase"org.jmol.adapter.readers."private static final java.lang.StringCML_NAMESPACE_URI"http://www.xml-cml.org/schema"private static final intLEADER_CHAR_MAX64 -
org.jmol.adapter.smarter.SmarterJmolAdapter Modifier and Type Constant Field Value public static final java.lang.StringPATH_KEY".PATH" -
org.jmol.adapter.smarter.XtalSymmetry Modifier and Type Constant Field Value private static final intPARTICLE_CHAIN1private static final intPARTICLE_NONE0private static final intPARTICLE_SYMOP2
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org.jmol.api.JmolAdapter Modifier and Type Constant Field Value public static final intORDER_AROMATIC515public static final intORDER_AROMATIC_DOUBLE514public static final intORDER_AROMATIC_SINGLE513public static final intORDER_COVALENT_DOUBLE2public static final intORDER_COVALENT_QUAD4public static final intORDER_COVALENT_SINGLE1public static final intORDER_COVALENT_TRIPLE3public static final intORDER_HBOND2048public static final intORDER_PARTIAL0133public static final intORDER_PARTIAL1266public static final intORDER_PARTIAL2397public static final intORDER_PARTIAL32100public static final intORDER_PYMOL_MULT98304public static final intORDER_PYMOL_SINGLE65536public static final intORDER_STEREO_FAR1041public static final intORDER_STEREO_NEAR1025public static final intORDER_UNSPECIFIED17 -
org.jmol.api.JmolDataManager Modifier and Type Constant Field Value public static final intDATA_LABEL0public static final intDATA_SAVE_IN_STATE4public static final intDATA_SELECTION2public static final intDATA_TYPE3public static final intDATA_TYPE_AF1public static final intDATA_TYPE_AFF2public static final intDATA_TYPE_AFFF3public static final intDATA_TYPE_LAST-2public static final intDATA_TYPE_STRING0public static final intDATA_TYPE_UNKNOWN-1public static final intDATA_VALUE1 -
org.jmol.api.JmolGestureServerInterface Modifier and Type Constant Field Value public static final intHAS_CLIENT2public static final intHAS_DRIVER4public static final intOK1
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org.jmol.atomdata.AtomData Modifier and Type Constant Field Value public static final intMODE_FILL_COORDS1public static final intMODE_FILL_MODEL0public static final intMODE_FILL_MOLECULES4public static final intMODE_FILL_MULTIMODEL16public static final intMODE_FILL_RADII2public static final intMODE_GET_ATTACHED_HYDROGENS8
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org.jmol.bspt.Bspt Modifier and Type Constant Field Value static final intleafCountMax2static final intMAX_TREE_DEPTH100
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org.jmol.c.PAL Modifier and Type Constant Field Value public static final bytePALETTE_ALTLOC14public static final bytePALETTE_AMINO8public static final bytePALETTE_CHAIN10public static final bytePALETTE_CPK1public static final bytePALETTE_ENERGY19public static final bytePALETTE_FIXEDTEMP5public static final bytePALETTE_FORMAL_CHARGE3public static final bytePALETTE_GROUP75public static final bytePALETTE_INSERTION15public static final bytePALETTE_JMOL16public static final bytePALETTE_MOLECULE77public static final bytePALETTE_MONOMER76public static final bytePALETTE_NONE0public static final bytePALETTE_PARTIAL_CHARGE2public static final bytePALETTE_POLYMER87public static final bytePALETTE_PROPERTY84public static final bytePALETTE_RASMOL17public static final bytePALETTE_SHAPELY9public static final bytePALETTE_STRAIGHTNESS86public static final bytePALETTE_STRUCTURE7public static final bytePALETTE_SURFACE70public static final bytePALETTE_TEMP68public static final bytePALETTE_TYPE18public static final bytePALETTE_VARIABLE85public static final bytePALETTE_VOLATILE64
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org.jmol.dssx.DSSR1 Modifier and Type Constant Field Value private static final java.lang.StringDSSR_PATHS"..bulges.nts_long..coaxstacks.stems.pairs.nt*..hairpins.nts_long..hbonds.atom1_id;atom2_id..helices.pairs.nt*..iloops.nts_long..isocanonpairs.nt*..junctions.nts_long..kissingloops.hairpins.nts_long..multiplets.nts_long..nonstack.nts_long..nts.nt_id..pairs.nt*..sssegments.nts_long..stacks.nts_long..stems.pairs.nt*.."
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org.jmol.export.___Exporter Modifier and Type Constant Field Value protected static final floatdegreesPerRadian57.295780181884766f -
org.jmol.export._ObjExporter Modifier and Type Constant Field Value private static final booleandebugfalse
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org.jmol.g3d.org.jmol.g3d.LineRenderer Modifier and Type Constant Field Value private static final intVISIBILITY_CLIPPED1private static final intVISIBILITY_OFFSCREEN2private static final intVISIBILITY_UNCLIPPED0 -
org.jmol.g3d.SphereRenderer Modifier and Type Constant Field Value private static final intmaxOddSizeSphere49static final intmaxSphereDiameter1000static final intmaxSphereDiameter22000private static final intSHADE_SLAB_CLIPPED47 -
org.jmol.g3d.TriangleRenderer Modifier and Type Constant Field Value private static final intDEFAULT64
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org.jmol.java.BS Modifier and Type Constant Field Value private static final intADDRESS_BITS_PER_WORD6private static final intBITS_PER_WORD64private static final longWORD_MASK-1L
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org.jmol.jvxl.calc.MarchingCubes Modifier and Type Constant Field Value protected static final intMODE_CUBE1protected static final intMODE_JVXL2protected static final intMODE_PLANES3 -
org.jmol.jvxl.calc.MarchingSquares Modifier and Type Constant Field Value public static final intCONTOUR_POINT-1public static final intdefaultContourCount9public static final intEDGE_POINT-3private static final intnContourMax100public static final intVERTEX_POINT-2
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org.jmol.jvxl.data.JvxlCoder Modifier and Type Constant Field Value public static final intCONTOUR_BITSET1public static final intCONTOUR_COLIX3public static final intCONTOUR_COLOR4public static final intCONTOUR_FDATA5public static final intCONTOUR_NPOLYGONS0public static final intCONTOUR_POINTS6public static final intCONTOUR_VALUE2public static final intdefaultColorFractionBase35public static final intdefaultColorFractionRange90public static final intdefaultEdgeFractionBase35public static final intdefaultEdgeFractionRange90public static final java.lang.StringJVXL_VERSION_XML"2.3"public static final java.lang.StringJVXL_VERSION1"2.0" -
org.jmol.jvxl.data.MeshData Modifier and Type Constant Field Value public static final intMODE_GET_COLOR_INDEXES2public static final intMODE_GET_VERTICES1public static final intMODE_PUT_SETS3public static final intMODE_PUT_VERTICES4
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org.jmol.jvxl.readers.org.jmol.jvxl.readers.IsoIntersectReader Modifier and Type Constant Field Value private static final intTYPE_DIFF2private static final intTYPE_DIFF_PAIR4private static final intTYPE_FUNCTION0private static final intTYPE_MAX3private static final intTYPE_SUM1 -
org.jmol.jvxl.readers.org.jmol.jvxl.readers.IsoShapeReader Modifier and Type Constant Field Value private static final doubleA00.52918private static final floatATOMIC_ORBITAL_ZERO_CUT_OFF1.0000000116860974E-7fprivate static final doubleROOT21.414214 -
org.jmol.jvxl.readers.org.jmol.jvxl.readers.KinemageReader Modifier and Type Constant Field Value private static final intPOINTS_ALL0private static final intPOINTS_HETS4private static final intPOINTS_MCMC1private static final intPOINTS_MCSC3private static final intPOINTS_SCSC2 -
org.jmol.jvxl.readers.Parameters Modifier and Type Constant Field Value static final floatANGSTROMS_PER_BOHR0.529177188873291fstatic final intdefaultColorFractionBase35static final intdefaultColorFractionRange90static final intdefaultColorNegative-65536static final intdefaultColorNegativeLCAO-8388480static final intdefaultColorPositive-16776961static final intdefaultColorPositiveLCAO-23296static final intdefaultContourCount11static final floatdefaultCutoff0.019999999552965164fstatic final intdefaultEdgeFractionBase35static final intdefaultEdgeFractionRange90static final floatdefaultLobeCutoff0.14000000059604645fstatic final floatdefaultMappedDataMax1.0fstatic final floatdefaultMappedDataMin0.0fstatic final floatdefaultMepCutoff0.10000000149011612fstatic final floatdefaultMepMax0.10000000149011612fstatic final floatdefaultMepMin-0.10000000149011612fstatic final floatdefaultOrbitalCutoff0.03999999910593033fstatic final floatdefaultOrbitalCutoffOld0.14000000059604645fstatic final floatdefaultQMElectronDensityCutoff0.009999999776482582fpublic static final floatdefaultQMOrbitalCutoff0.05000000074505806fstatic final floatdefaultSolventRadius1.2000000476837158fstatic final intHAS_MAXGRID256static final intIS_POINTMAPPABLE512static final intIS_SILENT64static final intIS_SLABBABLE1024public static final intIS_SOLVENTTYPE128public static final intMEP_MAX_GRID40public static final intMO_MAX_GRID80static final intnContourMax100static final intNO_ANISOTROPY32static final intQM_TYPE_GAUSSIAN1static final intQM_TYPE_NCI_PRO3static final intQM_TYPE_NCI_SCF4static final intQM_TYPE_SLATER2static final intQM_TYPE_UNKNOWN0static final intQM_TYPE_VOLUME_DATA5public static final intSTATE_DATA_COLORED3public static final intSTATE_DATA_READ2public static final intSTATE_INITIALIZED1public static final intSTATE_UNINITIALIZED0static final intSURFACE_ATOMICORBITAL1294static final intSURFACE_ELLIPSOID266static final intSURFACE_ELLIPSOID367static final intSURFACE_FUNCTIONXY8static final intSURFACE_FUNCTIONXYZ9static final intSURFACE_GEODESIC74static final intSURFACE_INTERSECT1333static final intSURFACE_LCAOCARTOON69static final intSURFACE_LOBE68public static final intSURFACE_LONEPAIR70static final intSURFACE_MEP1328static final intSURFACE_MLP1329static final intSURFACE_MOLECULAR1203static final intSURFACE_MOLECULARORBITAL1837static final intSURFACE_NCI1844static final intSURFACE_NOMAP1205static final intSURFACE_NONE0static final intSURFACE_PROPERTY1206public static final intSURFACE_RADICAL71static final intSURFACE_SASURFACE1196static final intSURFACE_SOLVENT1195static final intSURFACE_SPHERE65 -
org.jmol.jvxl.readers.org.jmol.jvxl.readers.PyMOLMeshReader Modifier and Type Constant Field Value static final intcMapSourceBRIX6static final intcMapSourceCCP42static final intcMapSourceChempyBrick8static final intcMapSourceCrystallographic1static final intcMapSourceDesc4static final intcMapSourceFLD5static final intcMapSourceGeneralPurpose3static final intcMapSourceGRD7static final intcMapSourceObsolete10static final intcMapSourceVMDPlugin9static final intOBJECT_MAPDATA2static final intOBJECT_MAPMESH3 -
org.jmol.jvxl.readers.SurfaceReader Modifier and Type Constant Field Value static final floatANGSTROMS_PER_BOHR0.529177188873291fstatic final floatdefaultCutoff0.019999999552965164fstatic final floatdefaultMappedDataMax1.0fstatic final floatdefaultMappedDataMin0.0f
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org.jmol.minimize.Util Modifier and Type Constant Field Value public static final doubleDEG_TO_RAD0.017453292519943295static final doublemax_squarable_double1.0E150static final doublemin_squarable_double1.0E-150public static final doubleRAD_TO_DEG57.29577951308232
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org.jmol.minimize.forcefield.org.jmol.minimize.forcefield.Calculations Modifier and Type Constant Field Value static final intCALC_ANGLE1static final intCALC_DISTANCE0static final intCALC_ES6static final intCALC_MAX7static final intCALC_OOP4static final intCALC_STRETCH_BEND2static final intCALC_TORSION3static final intCALC_VDW5public static final doubleDEG_TO_RAD0.017453292519943295static final doubleKCAL_TO_KJ4.1868private static final doublePI_OVER_21.5707963267948966public static final doubleRAD_TO_DEG57.29577951308232private static final doubleTWO_PI6.283185307179586 -
org.jmol.minimize.forcefield.org.jmol.minimize.forcefield.CalculationsMMFF Modifier and Type Constant Field Value public static final intDA_D68public static final intDA_DA133static final doubleFPAR143.9325 -
org.jmol.minimize.forcefield.org.jmol.minimize.forcefield.CalculationsUFF Modifier and Type Constant Field Value static final doubleKCAL2292.1096static final doubleKCAL3321390.2842991599998static final doubleKCAL44184.2192static final doubleKCAL625.1208static final doubleKCAL6442696.8016159999997static final intPAR_D3static final intPAR_HARD9static final intPAR_R0static final intPAR_RADIUS10static final intPAR_THETA1static final intPAR_U7static final intPAR_V6static final intPAR_X2static final intPAR_XI8static final intPAR_Z5static final intPAR_ZETA4 -
org.jmol.minimize.forcefield.ForceField Modifier and Type Constant Field Value public static final intABI_IJ3public static final intABI_JK4static final intEANGLE4static final intEBOND2static final intEELECTROSTATIC128static final intENERGY1static final intEOOP32static final intESTRBND8static final intETORSION16static final intEVDW64public static final intR30public static final intR41public static final intR52public static final intRaromatic3public static final intTBI_AB4public static final intTBI_BC5public static final intTBI_CD6 -
org.jmol.minimize.forcefield.ForceFieldMMFF Modifier and Type Constant Field Value private static final intA4_BNDK123private static final intA4_CHRG124private static final intA4_SB125private static final intA4_SBDEF126private static final intA4_VDW122private static final intKEY_BNDK0private static final intKEY_OOP6private static final intKEY_PBCI0private static final intKEY_SBDEF0private static final intKEY_VDW0private static final java.lang.Stringnames"END.BCI.CHG.ANG.NDK.OND.OOP.TBN.FSB.TOR.VDW."private static final intTYPE_ANGLE5private static final intTYPE_BNDK546private static final intTYPE_BOND3private static final intTYPE_CHRG34private static final intTYPE_OOP13private static final intTYPE_PBCI1private static final intTYPE_SB21private static final intTYPE_SBDEF37private static final intTYPE_TORSION9private static final intTYPE_VDW17 -
org.jmol.minimize.forcefield.ForceFieldUFF Modifier and Type Constant Field Value private static final intPT_CHARGE5private static final intPT_CONNECT6private static final intPT_ELEMENT2private static final intTOKEN_AROMATIC3private static final intTOKEN_ELEMENT_ALLYLIC6private static final intTOKEN_ELEMENT_CHARGED1private static final intTOKEN_ELEMENT_CONNECTED2private static final intTOKEN_ELEMENT_ONLY0private static final intTOKEN_ELEMENT_SP4 -
org.jmol.minimize.forcefield.org.jmol.minimize.forcefield.MMFFAngleCalc Modifier and Type Constant Field Value static final doubleCB-0.006981317007977318 -
org.jmol.minimize.forcefield.org.jmol.minimize.forcefield.MMFFDistanceCalc Modifier and Type Constant Field Value static final doubleCS-2.0static final doubleCS22.3333333333333335static final doubleFSTRETCH71.96625 -
org.jmol.minimize.forcefield.org.jmol.minimize.forcefield.MMFFESCalc Modifier and Type Constant Field Value private static final doubleBUFF0.05 -
org.jmol.minimize.forcefield.org.jmol.minimize.forcefield.MMFFOOPCalc Modifier and Type Constant Field Value static final doubleFOOP71.96568080495746static final doubleFOOPD2.5120761569715815
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org.jmol.modelkit.ModelKitPopupResourceBundle Modifier and Type Constant Field Value private static final java.lang.StringMENU_NAME"modelkitMenu"
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org.jmol.modelset.Atom Modifier and Type Constant Field Value public static final intATOM_INFRAME1public static final intATOM_INFRAME_NOTHIDDEN9public static final intATOM_NOFLAGS-64public static final intATOM_NOTHIDDEN8public static final intATOM_SHAPE_VIS_MASK-10public static final intATOM_VISIBLE4public static final intATOM_VISSET2private static final byteFLAG_MASK3private static final byteIS_HETERO_FLAG2public static final floatRADIUS_GLOBAL16.100000381469727fpublic static final intRADIUS_MAX16private static final byteVIBRATION_VECTOR_FLAG1 -
org.jmol.modelset.AtomCollection Modifier and Type Constant Field Value private static final floatalmost1802.9845130443573fpublic static final intTAINT_ATOMNAME0public static final intTAINT_ATOMNO13public static final intTAINT_ATOMTYPE1public static final intTAINT_BONDINGRADIUS6public static final intTAINT_CHAIN16public static final intTAINT_COORD2public static final intTAINT_ELEMENT3public static final intTAINT_FORMALCHARGE4public static final intTAINT_HYDROPHOBICITY5public static final intTAINT_MAX17public static final intTAINT_OCCUPANCY7public static final intTAINT_PARTIALCHARGE8public static final intTAINT_RESNO15public static final intTAINT_SEQID14public static final intTAINT_TEMPERATURE9public static final intTAINT_VALENCE10public static final intTAINT_VANDERWAALS11public static final intTAINT_VIBRATION12 -
org.jmol.modelset.BondCollection Modifier and Type Constant Field Value protected static final intBOND_GROWTH_INCREMENT250protected static final intMAX_BONDS_LENGTH_TO_CACHE5protected static final intMAX_NUM_TO_CACHE200 -
org.jmol.modelset.Group Modifier and Type Constant Field Value private static final intINSERTION_CODE_MASK127private static final intSEQUENCE_NUMBER_FLAG128private static final intSEQUENCE_NUMBER_SHIFT8 -
org.jmol.modelset.HBond Modifier and Type Constant Field Value private static final doubleQConst-27888.0 -
org.jmol.modelset.LabelToken Modifier and Type Constant Field Value private static final java.lang.StringlabelTokenParams"AaBbCcDEefGgIiLlMmNnOoPpQqRrSsTtUuVvWXxxYyyZzz%%%gqW"public static final java.lang.StringSTANDARD_LABEL"%[identify]"private static final java.lang.StringtwoCharLabelTokenParams"fuv" -
org.jmol.modelset.Measurement Modifier and Type Constant Field Value public static final intNMR_DC1public static final intNMR_JC2public static final intNMR_NOT0 -
org.jmol.modelset.ModelLoader Modifier and Type Constant Field Value private static final intdefaultGroupCount32
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org.jmol.modelsetbio.AminoMonomer Modifier and Type Constant Field Value private static final floatbeta0.296705961227417fprivate static final byteC3private static final byteCA0private static final byteN2private static final byteO1private static final byteOT4 -
org.jmol.modelsetbio.AminoPolymer Modifier and Type Constant Field Value private static final floatmaxHbondAlphaDistance9.0fprivate static final floatmaxHbondAlphaDistance281.0fprivate static final floatminimumHbondDistance20.25f -
org.jmol.modelsetbio.BioExt Modifier and Type Constant Field Value private static final java.lang.StringaaPlus"LYSN"private static final java.lang.StringaaSp2"ARGN;ASNN;ASNO;ASPO;GLNN;GLNO;GLUO;HISN;HISC;PHECTRPC;TRPN;TYRC"private static final java.lang.StringaaSp21"ARGNE;ARGNH1;ASNNH2;GLNNE2;TRPNE1;HISNE2"private static final java.lang.StringnaNoH"A3;A1;C3;G3;I3" -
org.jmol.modelsetbio.BioPolymer Modifier and Type Constant Field Value protected static final intTYPE_AMINO1protected static final intTYPE_CARBOHYDRATE3protected static final intTYPE_NOBONDING0protected static final intTYPE_NUCLEIC2 -
org.jmol.modelsetbio.BioResolver Modifier and Type Constant Field Value private static final java.lang.StringallCarbohydrates",[AHR],[ALL],[AMU],[ARA],[ARB],[BDF],[BDR],[BGC],[BMA],[FCA],[FCB],[FRU],[FUC],[FUL],[GAL],[GLA],[GLC],[GXL],[GUP],[LXC],[MAN],[RAM],[RIB],[RIP],[XYP],[XYS],[CBI],[CT3],[CTR],[CTT],[LAT],[MAB],[MAL],[MLR],[MTT],[SUC],[TRE],[GCU],[MTL],[NAG],[NDG],[RHA],[SOR],[SOL],[SOE],[XYL],[A2G],[LBT],[NGA],[SIA],[SLB],[AFL],[AGC],[GLB],[NAN],[RAA]" -
org.jmol.modelsetbio.NucleicMonomer Modifier and Type Constant Field Value private static final byteC1P25private static final byteC25private static final byteC2P26private static final byteC3P22private static final byteC47private static final byteC4P27private static final byteC53private static final byteC5P29static final byteC61private static final byteC810private static final byteH3T20private static final byteH5T18private static final byteN14private static final byteN217private static final byteN36private static final byteN414private static final byteN616private static final byteN79private static final byteN911private static final byteNP15private static final byteO1P23private static final byteO28private static final byteO2P24private static final byteO2Pr2private static final byteO3P21private static final byteO412private static final byteO4P28private static final byteO5P19private static final byteO613 -
org.jmol.modelsetbio.PhosphorusMonomer Modifier and Type Constant Field Value protected static final byteP0
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org.jmol.multitouch.ActionManagerMT Modifier and Type Constant Field Value public static final intBIRTH0public static final intCLICK3public static final intCLICK_EVENT8public static final intDBLCLK_EVENT5public static final intDBLCLK_GESTURE6public static final intDEATH1public static final intDRAG_EVENT0public static final intDRAG_GESTURE0public static final intDRIVER_NONE-2public static final intFLICK_EVENT6public static final intFLICK_GESTURE7public static final intINVALID_GESTURE9public static final intMOVE2public static final intMULTI_POINT_DRAG_GESTURE1public static final intRELATIVE_DRAG_EVENT7public static final intRELATIVE_DRAG_GESTURE8public static final intROTATE_EVENT1public static final intROTATE_GESTURE2public static final intSERVICE_LOST-1public static final intSPIN_EVENT2public static final intSPIN_GESTURE3public static final intTOUCH_EVENT3public static final intTOUCH_GESTURE4public static final intZOOM_EVENT4public static final intZOOM_GESTURE5
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org.jmol.multitouch.sparshui.SinglePointGesture Modifier and Type Constant Field Value private static final longMAXIMUM_CLICK_TIME200L
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org.jmol.popup.JmolGenericPopup Modifier and Type Constant Field Value private static final intMENUITEM_HEIGHT20private static final intUPDATE_ALL0private static final intUPDATE_CONFIG1protected static final intUPDATE_NEVER-1private static final intUPDATE_SHOW2 -
org.jmol.popup.MainPopupResourceBundle Modifier and Type Constant Field Value private static final java.lang.StringMENU_NAME"popupMenu"
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org.jmol.quantum.MepCalculation Modifier and Type Constant Field Value protected static final intE_MINUS_D3protected static final intE_MINUS_D_OVER_21protected static final intONE_OVER_D0protected static final intONE_OVER_ONE_PLUS_D2 -
org.jmol.quantum.MOCalculation Modifier and Type Constant Field Value private static final doubleCUT-50.0private static final doubleROOT31.7320507764816284 -
org.jmol.quantum.NciCalculation Modifier and Type Constant Field Value private static final doubleNO_VALUE100.0private static final intTYPE_ALL0private static final intTYPE_INTER2private static final intTYPE_INTRA1private static final intTYPE_LIGAND3 -
org.jmol.quantum.NMRCalculation Modifier and Type Constant Field Value private static final doubleDIPOLAR_FACTOR1054.5717253362893private static final doublee_charge1.60217646E-19private static final doubleh_bar_planck1.0545717253362894E-34private static final doubleh_planck6.62606957E-34private static final doubleJ_FACTOR0.0167840302932219private static final intMAGNETOGYRIC_RATIO1private static final doubleQ_FACTOR2.349647144641375E8private static final intQUADRUPOLE_MOMENT2private static final java.lang.Stringresource"nmr_data.txt" -
org.jmol.quantum.QS Modifier and Type Constant Field Value public static final java.lang.StringCANONICAL_DC_LIST"DXX DYY DZZ DXY DXZ DYZ"public static final java.lang.StringCANONICAL_DS_LIST"d0 d1+ d1- d2+ d2-"public static final java.lang.StringCANONICAL_FC_LIST"XXX YYY ZZZ XYY XXY XXZ XZZ YZZ YYZ XYZ"public static final java.lang.StringCANONICAL_FS_LIST"f0 f1+ f1- f2+ f2- f3+ f3-"public static final intDC4public static final intDS3public static final intFC6public static final intFS5public static final intGC8public static final intGS7public static final intHC10public static final intHS9public static final intIC12public static final intIS11private static final intMAXID13public static final intP1public static final intS0public static final intSP2 -
org.jmol.quantum.QuantumCalculation Modifier and Type Constant Field Value protected static final floatbohr_per_angstrom1.8897161483764648f
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org.jmol.renderbio.BioMeshRenderer Modifier and Type Constant Field Value private static final intABSOLUTE_MIN_MESH_SIZE3private static final intMIN_MESH_RENDER_SIZE8private static final intMODE_ELLIPTICAL2private static final intMODE_FLAT1private static final intMODE_NONELLIPTICAL3private static final intMODE_TUBE0
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org.jmol.renderspecial.DipolesRenderer Modifier and Type Constant Field Value private static final intarrowHeadBase4private static final floatarrowHeadOffset0.8999999761581421fprivate static final intarrowHeadTip5private static final floatarrowHeadWidthFactor2.0fprivate static final intcenter3private static final intcross1private static final intcrossEnd2private static final floatcrossOffset0.10000000149011612fprivate static final floatcrossWidth0.03999999910593033fprivate static final intcylinderBase0 -
org.jmol.renderspecial.EllipsoidsRenderer Modifier and Type Constant Field Value private static final intOPT_ARCS1private static final intOPT_ARROWS5private static final intOPT_AXES2private static final intOPT_BALL4private static final intOPT_COUNT7private static final intOPT_DOTS0private static final intOPT_FILL3private static final intOPT_WIREFRAME6private static final floattoRadians0.01745329238474369f -
org.jmol.renderspecial.VectorsRenderer Modifier and Type Constant Field Value private static final floatarrowHeadOffset-0.20000000298023224f
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org.jmol.script.CommandWatcherThread Modifier and Type Constant Field Value private static final intcommandDelay50 -
org.jmol.script.ScriptCompiler Modifier and Type Constant Field Value private static final intCONTINUE2private static final intEOL3private static final intERROR4private static final intOK0private static final intOK21private static final intRESTART5 -
org.jmol.script.org.jmol.script.ScriptDelayThread Modifier and Type Constant Field Value public static final intPAUSE_DELAY-100 -
org.jmol.script.ScriptError Modifier and Type Constant Field Value static final intERROR_axisExpected0static final intERROR_backgroundModelError1public static final intERROR_badArgumentCount2static final intERROR_badMillerIndices3public static final intERROR_badRGBColor4static final intERROR_booleanExpected5static final intERROR_booleanOrNumberExpected6static final intERROR_booleanOrWhateverExpected7public static final intERROR_cannotSet56static final intERROR_colorExpected8static final intERROR_colorOrPaletteRequired9static final intERROR_commandExpected10static final intERROR_coordinateOrNameOrExpressionRequired11static final intERROR_drawObjectNotDefined12public static final intERROR_endOfStatementUnexpected13public static final intERROR_expressionExpected14public static final intERROR_expressionOrIntegerExpected15static final intERROR_filenameExpected16public static final intERROR_fileNotFoundException17public static final intERROR_incompatibleArguments18public static final intERROR_insufficientArguments19static final intERROR_integerExpected20static final intERROR_integerOutOfRange21public static final intERROR_invalidArgument22public static final intERROR_invalidParameterOrder23public static final intERROR_keywordExpected24public static final intERROR_moCoefficients25public static final intERROR_moIndex26public static final intERROR_moModelError27public static final intERROR_moOccupancy28public static final intERROR_moOnlyOne29public static final intERROR_multipleModelsDisplayedNotOK30static final intERROR_multipleModelsNotOK55public static final intERROR_noData31public static final intERROR_noPartialCharges32static final intERROR_noUnitCell33public static final intERROR_numberExpected34static final intERROR_numberMustBe35static final intERROR_numberOutOfRange36static final intERROR_objectNameExpected37static final intERROR_planeExpected38static final intERROR_propertyNameExpected39static final intERROR_spaceGroupNotFound40static final intERROR_stringExpected41static final intERROR_stringOrIdentifierExpected42static final intERROR_tooManyPoints43static final intERROR_tooManyScriptLevels44static final intERROR_unrecognizedAtomProperty45static final intERROR_unrecognizedBondProperty46static final intERROR_unrecognizedCommand47static final intERROR_unrecognizedExpression48static final intERROR_unrecognizedObject49static final intERROR_unrecognizedParameter50static final intERROR_unrecognizedParameterWarning51static final intERROR_unrecognizedShowParameter52public static final intERROR_what53public static final intERROR_writeWhat54 -
org.jmol.script.ScriptEval Modifier and Type Constant Field Value private static final java.lang.StringsaveList"bonds? context? coordinates? orientation? rotation? selection? state? structure?" -
org.jmol.script.ScriptMathProcessor Modifier and Type Constant Field Value private static final java.lang.StringqMods" w:0 x:1 y:2 z:3 normal:4 eulerzxz:5 eulerzyz:6 vector:-1 theta:-2 axisx:-3 axisy:-4 axisz:-5 axisangle:-6 matrix:-9" -
org.jmol.script.org.jmol.script.ScriptTokenParser Modifier and Type Constant Field Value protected static final intERROR_badArgumentCount0protected static final intERROR_badContext1protected static final intERROR_commandExpected2private static final intERROR_coordinateExpected3protected static final intERROR_endOfCommandUnexpected4private static final intERROR_endOfExpressionExpected5private static final intERROR_identifierOrResidueSpecificationExpected6private static final intERROR_invalidAtomSpecification7private static final intERROR_invalidChainSpecification8protected static final intERROR_invalidExpressionToken9private static final intERROR_invalidModelSpecification10protected static final intERROR_missingEnd11private static final intERROR_numberExpected12private static final intERROR_numberOrVariableNameExpected13private static final intERROR_residueSpecificationExpected14protected static final intERROR_tokenExpected15protected static final intERROR_tokenUnexpected16private static final intERROR_unrecognizedExpressionToken17protected static final intERROR_unrecognizedParameter18protected static final intERROR_unrecognizedToken19 -
org.jmol.script.T Modifier and Type Constant Field Value public static final int_1275068449public static final intabs134218250public static final intabsolute1073741826public static final intacos134218242public static final intadd1275069441public static final intaddhydrogens1073741828public static final intadjust1073741830public static final intadpmax1111490561public static final intadpmin1111490562public static final intalign1073741832public static final intall1073742327public static final intallconnected1073741834public static final intallfloat256public static final intallowembeddedscripts603979778public static final intallowgestures603979780public static final intallowkeystrokes603979781public static final intallowmodelkit603979782public static final intallowmoveatoms603979783public static final intallowmultitouch603979784public static final intallowrotateselected603979785public static final intaltloc1086324739public static final intambientocclusion553648129public static final intambientpercent553648130public static final intamino2097154public static final intandequals268435666public static final intangle134217729public static final intangstroms1073741836public static final intanimation4097public static final intanimationfps553648132public static final intanimationmode545259521public static final intanisotropy1073741837public static final intantialiasdisplay603979786public static final intantialiasimages603979788public static final intantialiastranslucent603979790public static final intappend1073741839public static final intappendnew603979792public static final intappletproxy545259522public static final intapplysymmetrytobonds603979794public static final intarc1073741840public static final intarea1073741842public static final intaromatic1075838996public static final intarray1275068418public static final intarrow1073741846public static final intas1073741848public static final intassign4098public static final intasync1073741849public static final intatomExpressionCommand12288public static final intatomicorbital1073741850public static final intatomid1094713346public static final intatomindex1094713347public static final intatomname1086326786public static final intatomno1094715393public static final intatompicking603979796public static final intatomproperty1077936128public static final intatoms1140850689public static final intatomtype1086326785public static final intatomtypes545259524public static final intatomx1111492609public static final intatomy1111492610public static final intatomz1111492611public static final intaudio1073741851public static final intauto1073741852public static final intautobond603979798public static final intautofps603979800public static final intaverage96public static final intaxes1611272194public static final intaxescolor545259526public static final intaxesmode553648134public static final intaxesmolecular603979804public static final intaxesoffset570425345public static final intaxesorientationrasmol603979806public static final intaxesscale570425346public static final intaxesunitcell603979808public static final intaxeswindow603979810public static final intaxis1073741854public static final intaxis1color545259528public static final intaxis2color545259530public static final intaxis3color545259532public static final intaxisangle134217731public static final intbabel1073741856public static final intbabel211073741857public static final intback1073741858public static final intbackbone1114249217public static final intbackbonesteps603979811public static final intbackground1610616835public static final intbackgroundcolor545259534public static final intbackgroundmodel536870914public static final intbacklit1073741861public static final intbackshell1073741862public static final intballs1073741859public static final intbarb1073741860public static final intbarray15public static final intbasemodel2097200public static final intbasepair1073741864public static final intbest1073741863public static final intbin1275068420public static final intbinary1073741866public static final intbind4100public static final intbitset10public static final intblockdata1073741868public static final intbondcount1228931587public static final intbonded2097155public static final intbondingradius1111492618public static final intbondingversion553648138public static final intbondmode1610612737public static final intbondmodeor603979812public static final intbondorder4101public static final intbondpicking603979814public static final intbondradiusmilliangstroms553648136public static final intbonds1677721602public static final intbondset1073741870public static final intbondtolerance570425348public static final intbooleanparam603979776public static final intbottom1073741871public static final intboundbox1678381065public static final intboundboxcolor545259536public static final intbranch1073742328public static final intbreakcmd102407public static final intbrillouin1073741872public static final intcache134221829public static final intcalculate4102public static final intcameradepth570425350public static final intcancel1073741874public static final intcap1073741875public static final intcapture4103public static final intcarbohydrate2097188public static final intcartoon1112152066public static final intcartoonbaseedges603979816public static final intcartoonladders603979818public static final intcartoonribose603979819public static final intcartoonrockets603979820public static final intcartoonsfancy603979817public static final intcasecmd102411public static final intcatchcmd102412public static final intcavity1073741876public static final intcd20488public static final intcell1094713349public static final intcelshading603979822public static final intcelshadingpower553648137public static final intcenter12289public static final intcenterat4105public static final intcentroid1094713350public static final intcgo135174public static final intchain1086326788public static final intchaincasesensitive603979823public static final intchainno1094713351public static final intcheck1073741878public static final intchemical1073741879public static final intchemicalshift1111490563public static final intcircle1073741880public static final intclash1073741881public static final intclear1073741882public static final intclickable2097190public static final intclipboard1073741884public static final intcol1275068934public static final intcollapsed1073741886public static final intcolon268435490public static final intcolor1765808134public static final intcolorrasmol603979824public static final intcolorscheme1073741888public static final intcomma268435504public static final intcommand1073741890public static final intcommands1073741892public static final intcomparator268435712public static final intcompare134221831public static final intconfiguration1094717448public static final intconnect4106public static final intconnected134217736public static final intconsole528395public static final intconstraint1073741894public static final intcontact134353926public static final intcontext14public static final intcontextdepthmax553648167public static final intcontinuecmd102408public static final intcontour1073741896public static final intcontourlines1073741898public static final intcontours1073741900public static final intcoord1073742329public static final intcorners1073741902public static final intcos134218245public static final intcount1275068425public static final intcovalentradius1111490564public static final intcreate1073741904public static final intcriterion1073741905public static final intcross1275069442public static final intcrossed1073741906public static final intcurrentlocalpath545259538public static final intcurve1073741908public static final intcutoff1073741910public static final intcylinder1073741912public static final intdata134221834public static final intdataseparator545259540public static final intdebug536870916public static final intdebugscript603979825public static final intdecimal3public static final intdefaultanglelabel545259542public static final intdefaultcmd102413public static final intdefaultcolorscheme545259545public static final intdefaultdirectory545259546public static final intdefaultdistancelabel545259547public static final intdefaultdrawarrowscale570425352public static final intdefaultdropscript545259548public static final intdefaultlabelpdb545259543public static final intdefaultlabelxyz545259544public static final intdefaultlattice536870918public static final intdefaultloadfilter545259549public static final intdefaultloadscript545259550public static final intdefaultON524288public static final intdefaults545259552public static final intdefaultstructuredssp603979826public static final intdefaulttorsionlabel545259554public static final intdefaulttranslucent570425354public static final intdefaultvdw545259555public static final intdefine12290public static final intdelay528397public static final intdelaymaximumms553648140public static final intdelete12291public static final intdensity1073741914public static final intdeprecatedparam1610612736public static final intdepth554176526public static final intdiameter1073741917public static final intdiffusepercent553648142public static final intdipole135175public static final intdipolescale570425355public static final intdirection1073741918public static final intdisablepopupmenu603979827public static final intdiscrete1073741920public static final intdisplacement1073741922public static final intdisplay1610625028public static final intdisplaycellparameters603979828public static final intdisplayed2097192public static final intdistance1275069443public static final intdistancefactor1073741924public static final intdiv1275068928public static final intdivide268435632public static final intdna2097156public static final intdollarsign1073742330public static final intdomains1073741925public static final intdot1275069444public static final intdotdensity553648143public static final intdots1112150019public static final intdotscale553648144public static final intdotsselectedonly603979829public static final intdotsurface603979830public static final intdotted1073741926public static final intdownsample1073741928public static final intdragselected603979831public static final intdraw135176public static final intdrawfontsize570425356public static final intdrawhover603979832public static final intdrawing1073741929public static final intdrawpicking603979833public static final intdssp1073741915public static final intdsspcalchydrogen603979834public static final intdssr1073741916public static final intdynamicmeasurements603979835public static final inteccentricity1073741931public static final intecho537022465public static final inted1073741932public static final intedges1073741933public static final intedsurlcutoff545259556public static final intedsurlformat545259557public static final intedsurlformatdiff545259558public static final intelement1086326789public static final intelemisono1094713353public static final intelemno1094715402public static final intellipsoid1112150020public static final intellipsoidarcs603979836public static final intellipsoidarrows603979837public static final intellipsoidaxes603979838public static final intellipsoidaxisdiameter570425357public static final intellipsoidball603979839public static final intellipsoiddotcount553648145public static final intellipsoiddots603979840public static final intellipsoidfill603979841public static final intelsecmd364547public static final intelseif102402public static final intend102409public static final intendifcmd364548public static final intenergy1073741934public static final intenergyunits545259559public static final interror1073741935public static final inteta1111490565public static final inteval134218759public static final intexit266255public static final intexitjmol266256public static final intexportscale570425358public static final intexpressionBegin1073742325public static final intexpressionEnd1073742326public static final intfacecenteroffset1073741937public static final intfile1228935687public static final intfilecachedirectory545259560public static final intfilecaching603979842public static final intfill1073741938public static final intfilter1073741940public static final intfind1275068427public static final intfirst1073741942public static final intfixed12293public static final intfixedtemp1073741946public static final intfloatparam570425344public static final intfloatproperty1111490560public static final intflowCommand102400public static final intfont4114public static final intfontcaching603979844public static final intfontscaling603979845public static final intfontsize1610612738public static final intforceautobond603979846public static final intforcefield545259561public static final intforcmd134320648public static final intformalcharge1631586315public static final intformat1287653388public static final intfps1073741950public static final intfractionalrelative603979848public static final intfracx1111492612public static final intfracxyz1145047051public static final intfracy1111492613public static final intfracz1111492614public static final intframe4115public static final intfrank1611272202public static final intfrom1073741952public static final intfront1073741954public static final intfrontedges1073741956public static final intfrontlit1073741958public static final intfrontonly1073741960public static final intfull1073741961public static final intfullplane1073741962public static final intfullylit1073741964public static final intfunction134320141public static final intfunctionxy1073741966public static final intfunctionxyz1073741968public static final intfux1111492615public static final intfuxyz1145047053public static final intfuy1111492616public static final intfuz1111492617public static final intgeosurface1112150021public static final intgestureswipefactor570425359public static final intgetproperty1275072526public static final intgotocmd20500public static final intgreyscalerendering603979850public static final intgridpoints1073741970public static final intgroup1086324742public static final intgroup11086324743public static final intgroupid1094713356public static final intgroupindex1094713357public static final inthalo1112152070public static final inthash6public static final inthbond1613238294public static final inthbondsangleminimum570425360public static final inthbondsbackbone603979852public static final inthbondsdistancemaximum570425361public static final inthbondsrasmol603979853public static final inthbondssolid603979854public static final inthelix136314895public static final inthelix3102097160public static final inthelixalpha2097159public static final inthelixpi2097162public static final inthelixstep553648146public static final inthelp20482public static final inthelppath545259562public static final inthermitelevel553648147public static final inthetero1612709894public static final inthidden2097194public static final inthiddenlinesdashed603979856public static final inthide12294public static final inthidenameinpopup603979858public static final inthidenavigationpoint603979860public static final inthidenotselected603979862public static final inthighlight536870920public static final inthighresolution603979864public static final inthistory1610616855public static final inthistorylevel553648148public static final inthkl134219265public static final inthomo1073741973public static final inthover544771public static final inthoverdelay570425362public static final inthoverlabel545259563public static final inthydrogen1612709900public static final inthydrophobicity1113589786public static final intid1073741974public static final intidentifier1073741824public static final intidentify1086324745public static final intifcmd134320649public static final intignore1073741976public static final intimage4120public static final intimagestate603979867public static final intimplicitStringCommand20480public static final intin1275068432public static final intinchi1073741977public static final intinchikey1073741978public static final intincrement1073741981public static final intinfo1073741982public static final intinitialize266265public static final intinline1073741983public static final intinscode5public static final intinsertion1086324746public static final intinsideout1073741984public static final intinteger2public static final intinterior1073741986public static final intintermolecular1073741990public static final intinternal1073741988public static final intintersection134219266public static final intintparam553648128public static final intintproperty1094713344public static final intintramolecular1073741989public static final intinvertSelected4122public static final intisaromatic1073742331public static final intiskiosk603979868public static final intisosurface135180public static final intisosurfacekey603979869public static final intisosurfacepropertysmoothing603979870public static final intisosurfacepropertysmoothingpower553648149public static final intjavascript134238732public static final intjmol1073741991public static final intjoin1275069446public static final intjson1073741992public static final intjustifymeasurements603979871public static final intkeys1140850706private static final intkeyword16public static final intlabel1825200146public static final intlanguage545259564public static final intlanguagetranslation603979872public static final intlast1073741993public static final intlattice1073741994public static final intlcaocartoon135182public static final intleadatom2097165public static final intleft1073741996public static final intleftbrace1073742332public static final intleftdivide268435635public static final intleftparen268435472public static final intleftsquare268435520public static final intlegacyautobonding603979873public static final intlegacyhaddition603979874public static final intlegacyjavafloat603979875public static final intlength1140850691public static final intlighting1073741995public static final intline1073741998public static final intlinedata1073742000public static final intlines1140850692public static final intlink1073741999public static final intlist1073742001public static final intlistf13public static final intload134222849public static final intloadatomdatatolerance570425363public static final intloadformat545259565public static final intloadligandformat545259566public static final intlobe1073742002public static final intlog36869public static final intlogcommands603979876public static final intlogfile545259567public static final intloggestures603979877public static final intloglevel553648150public static final intlonepair1073742004public static final intloop528411public static final intlp1073742006public static final intlumo1073742008public static final intmacro4124public static final intmagneticshielding1111490566public static final intmanifest1073742010public static final intmapproperty4125public static final intmass1111490567public static final intmathExpressionCommand36864public static final intmathfunc134217728public static final intmathop268435456public static final intmathproperty1140850688public static final intmatrix3f11public static final intmatrix4f12public static final intmax64public static final intmaxset1073742014public static final intmeasure1745489939public static final intmeasureallmodels603979878public static final intmeasurementlabels603979879public static final intmeasurementnumbers1610612739public static final intmeasurements537006096public static final intmeasurementunits545259568public static final intmenu1073742015public static final intmep1073742016public static final intmesh1073742018public static final intmeshRibbon1112152071public static final intmeshscale553648151public static final intmessage20485public static final intmessagestylechime603979880public static final intmiddle1073742019public static final intmin32public static final intminbonddistance570425364public static final intminimizationcriterion570425365public static final intminimizationrefresh603979881public static final intminimizationsilent603979882public static final intminimizationsteps553648152public static final intminimize4126public static final intminmaxmask480public static final intminpixelselradius553648153public static final intminset1073742020public static final intminus268435616public static final intminusMinus268435649public static final intmisc1073741824public static final intmlp1073742022public static final intmo1073877010public static final intmode1073742024public static final intmodel1094717454public static final intmodelbased1073742027public static final intmodelindex1094713359public static final intmodelkitmode603979883public static final intmodify1073742025public static final intmodifyorcreate1073742026public static final intmodo1111490586public static final intmodt11111490580public static final intmodt21111490581public static final intmodt31111490582public static final intmodulateoccupancy603979884public static final intmodulation1275072532public static final intmodulationscale570425366public static final intmodx1111490583public static final intmodxyz1145045008public static final intmody1111490584public static final intmodz1111490585public static final intmolecular1073742028public static final intmolecule1094713360public static final intmonitorenergy603979885public static final intmonomer1094713361public static final intmorph1073742030public static final intmouse1073742031public static final intmousedragfactor570425367public static final intmousewheelfactor570425368public static final intmove4128public static final intmoveto4129public static final intmovie1073742032public static final intmrc1073742033public static final intmsms1073742034public static final intmul1275068929public static final intmul31275068930public static final intmultiplebondbananas603979886public static final intmultiplebondradiusfactor570425369public static final intmultiplebondspacing570425370public static final intmultiprocessor603979887public static final intmutate4130public static final intnada0public static final intname1073742035public static final intnavfps570425371public static final intnavigate4131public static final intnavigatesurface603979888public static final intnavigationdepth570425372public static final intnavigationmode603979889public static final intnavigationperiodic603979890public static final intnavigationslab570425373public static final intnavigationspeed570425374public static final intnavx570425376public static final intnavy570425378public static final intnavz570425380public static final intnbo1073877011public static final intnci1073742036public static final intnext1073742037public static final intnihresolverformat545259570public static final intnmr1073742038public static final intnmrpredictformat545259569public static final intnmrurlformat545259571public static final intnoArgs262144public static final intnobackshell1073742057public static final intnocontourlines1073742039public static final intnocross1073742040public static final intnodebug1073742041public static final intnodots1073742042public static final intnoedges1073742044public static final intnofill1073742046public static final intnohead1073742048public static final intnoload1073742050public static final intnomesh1073742052public static final intnone1073742333public static final intnoplane1073742054public static final intnormal1073742056public static final intnotfrontonly1073742058public static final intnotriangles1073742060public static final intnow134217749public static final intnucleic2097166public static final intobj1073742062public static final intobject1073742064public static final intoccupancy1128269825public static final intoff1073742334public static final intoffset1073742066public static final intoffsetside1073742068public static final intomega1111490568public static final inton1073742335public static final intonce1073742070public static final intonly1073742072public static final intopAnd268435552public static final intopAND268435584public static final intopaque1073742074public static final intopEQ268435860public static final intopGE268435857public static final intopGT268435856public static final intopIf805306401public static final intopLE268435858public static final intopLIKE268435862public static final intopLT268435859public static final intopNE268435861public static final intopNot268435568public static final intopOr268435536public static final intoptions1073742075public static final intopToggle268435538public static final intopXor268435537public static final intorbital1073742076public static final intorientation1073742077public static final intorigin1073742078public static final intout1073742079public static final intpacked1073742080public static final intpalindrome1073742082public static final intparallel102436public static final intparameters1073742083public static final intparamTypes662700032public static final intpartialcharge1111492619public static final intpartialdots603979891public static final intparticleradius570425381public static final intpath1073742084public static final intpathforallfiles545259572public static final intpause20487public static final intpdb1073742086public static final intpdbaddhydrogens603979892public static final intpdbgetheader603979893public static final intpdbheader1073742088public static final intpdbsequential603979894public static final intper1073742336public static final intpercent268435634public static final intpercentvdwatom553648154public static final intperiod1073742090public static final intperpendicular1073742092public static final intperper1073742337public static final intperspectivedepth603979895public static final intperspectivemodel553648155public static final intphase1073742094public static final intphi1111490569public static final intphongexponent553648156public static final intpicking545259573public static final intpickingspinrate553648157public static final intpickingstyle545259574public static final intpicklabel545259576public static final intpivot1140850707public static final intplanarparam1073742099public static final intplane134217750public static final intplatformspeed553648158public static final intplay1073742096public static final intplayrev1073742098public static final intplot4133public static final intplot3d135190public static final intplus268435617public static final intplusPlus268435650public static final intpmesh135188public static final intpocket1073742100public static final intpoint134217751public static final intpoint3f8public static final intpoint4f9public static final intpointgroup134217762public static final intpointgroupdistancetolerance570425382public static final intpointgrouplineartolerance570425384public static final intpointsperangstrom1073742104public static final intpolygon1073742106public static final intpolyhedra1275203608public static final intpolymer1094713362public static final intpolymerlength1094713363public static final intpop1275334681public static final intpredefinedset2097152public static final intpreservestate603979896public static final intprev1073742108public static final intprint36865public static final intprobe1073742109public static final intprocess102439public static final intprompt134256131public static final intproperty1715472409public static final intpropertyatomnumbercolumncount553648160public static final intpropertyatomnumberfield553648159public static final intpropertycolorscheme545259578public static final intpropertydatacolumncount553648162public static final intpropertydatafield553648164public static final intPROPERTYFLAGS1136656384public static final intpropselector268435665public static final intprotein2097168public static final intpsi1111490570public static final intpurine2097170public static final intpush1275335685public static final intpymol1073742110public static final intpyrimidine2097172public static final intquaternion134221850public static final intquaternionframe545259580public static final intquit266281public static final intrad1073742111public static final intradical1073742112public static final intradius1665140738public static final intramachandran4138public static final intrandom134219268public static final intrange1073742114public static final intrangeselected603979897public static final intrasmol1073742116public static final intredomove4139public static final intreference1073742118public static final intrefresh266284public static final intrefreshing603979898public static final intremove1073742119public static final intrepaintwaitms553648165public static final intreplace1275068443public static final intreset4141public static final intresidue1073742120public static final intresno1094715412public static final intresolution1073742122public static final intrestore4142public static final intrestrict12295public static final intresume4143public static final intreturncmd36866public static final intreverse1140850693public static final intreversecolor1073742124public static final intrewind1073742125public static final intribbon1112152073public static final intribbonaspectratio553648166public static final intribbonborder603979899public static final intright1073742126public static final intrightbrace1073742338public static final intrightparen268435473public static final intrightsquare268435521public static final intrmsd1073742127public static final intrna2097174public static final intrna3d1073742128public static final introck1073742129public static final introcket1112152074public static final introcketbarrels603979900public static final introtate528432public static final introtate451073742130public static final introtateSelected4145public static final introtation1073742132public static final introtationradius570425388public static final introw1275068935public static final intrubberband1073742134public static final intsasurface1073742135public static final intsave4146public static final intsaved1073742136public static final intsaveproteinstructurestate603979902public static final intscale1073742138public static final intscale3d1610612740public static final intscaleangstromsperinch570425390public static final intscene1073742139public static final intscreenx1111490571public static final intscreenxyz1145047052public static final intscreeny1111490572public static final intscreenz1111490573public static final intscript134222850public static final intscriptCommand4096public static final intscriptqueue603979904public static final intscriptreportinglevel553648168public static final intsearch134218756public static final intselect1275082245public static final intselectallmodels603979906public static final intselected1113589787public static final intselectedfloat224public static final intselecthetero603979908public static final intselecthydrogen603979910public static final intselection1073742140public static final intselectionhalos1611141171public static final intsemicolon1073742339public static final intseqcode1086324747public static final intseqid1094713365public static final intsequence1086324744public static final intset36867public static final intsetparam536870912public static final intsettable2048public static final intshape1086324748public static final intshapeCommand135168public static final intshapely1073742144public static final intsheet2097184public static final intsheetsmoothing570425392public static final intshow134222350public static final intshowaxes603979914public static final intshowboundbox603979916public static final intshowfrank603979918public static final intshowhiddenselectionhalos603979920public static final intshowhydrogens603979922public static final intshowkeystrokes603979924public static final intshowmeasurements603979926public static final intshowmodvecs603979927public static final intshowmultiplebonds603979928public static final intshownavigationpointalways603979930public static final intshowscript536870922public static final intshowtiming603979934public static final intshowunitcell603979936public static final intshowunitcelldetails603979937public static final intsidechain2097178public static final intsigma1073742146public static final intsign1073742147public static final intsilent1073742148public static final intsin134218244public static final intsite1094713366public static final intsize1140850694public static final intslab554176565public static final intslabbyatom603979939public static final intslabbymolecule603979940public static final intslabenabled603979942public static final intslabrange570425393public static final intsmallmoleculemaxatoms553648170public static final intsmartaromatic603979944public static final intsmiles134218757public static final intsmiles2dimageformat545259584public static final intsmilesurlformat545259582public static final intsolid1073742150public static final intsolvent1612709912public static final intsolventprobe603979948public static final intsolventproberadius570425394public static final intsort1275068444public static final intspacebeforesquare1073742195public static final intspacefill1112152075public static final intspacegroup1073742152public static final intspec_alternate1073742355public static final intspec_atom1073742356public static final intspec_chain1073742357public static final intspec_model1073742358public static final intspec_model21073742359public static final intspec_name_pattern1073742360public static final intspec_resid1073742361public static final intspec_seqcode1073742362public static final intspec_seqcode_range1073742363public static final intspecialposition2097196public static final intspecular536870924public static final intspecularexponent553648172public static final intspecularpercent553648174public static final intspecularpower553648176public static final intsphere1073742154public static final intspin1611141175public static final intspine2097186public static final intspinfps570425396public static final intspinx570425398public static final intspiny570425400public static final intspinz570425402public static final intsplit1275069447public static final intsqrt134218246public static final intsquared1073742156public static final intssbond1611141176public static final intssbondsbackbone603979952public static final intstar1112152076public static final intstarwidth570425403public static final intstate1073742158public static final intstatusreporting603979954public static final intstddev192public static final intstdinchi1073742159public static final intstdinchikey1073742160public static final intstep266298public static final intstereo528443public static final intstereodegrees570425404public static final intstop1073742162public static final intstraightness1111490574public static final intstrandcount553648178public static final intstrandcountformeshribbon553648180public static final intstrandcountforstrands553648182public static final intstrands1649022989public static final intstring4public static final intstrparam545259520public static final intstrproperty1086324736public static final intstrucid1086324749public static final intstrucno1094713367public static final intstructure1639976963public static final intstrutdefaultradius570425406public static final intstrutlengthmaximum570425408public static final intstruts659482public static final intstrutsmultiple603979955public static final intstrutspacing553648184public static final intsub1275068931public static final intsubset2109448public static final intsubstructure1237320707public static final intsubsystem1094713368public static final intsum128public static final intsum2160public static final intsupercell1073742163public static final intsurface2097180public static final intsurfacedistance1111490575public static final intswitchcmd102410public static final intsymbol1086326798public static final intsymmetry1088421903public static final intsymop1296041986public static final intsync4156public static final intsyncmouse603979956public static final intsyncscript603979958public static final inttemperature1111492620public static final inttensor1275068445public static final inttestflag1603979960public static final inttestflag2603979962public static final inttestflag3603979964public static final inttestflag4603979965public static final inttheta1111490576public static final intthismodel2097182public static final intthrowcmd36870public static final intticks1073742164public static final inttimeout536875070public static final inttimes268435633public static final inttimestimes268435651public static final inttitle1073742166public static final inttitleformat1073742168public static final intto1073742170public static final inttogglelabel1610612741public static final inttop1073742172public static final inttorsion1073742174public static final inttrace1112152078public static final inttracealpha603979966public static final inttrajectory536870926public static final inttransform1073742176public static final inttranslate4160public static final inttranslateSelected4162public static final inttranslation1073742178public static final inttranslucent603979967public static final inttriangles1073742182public static final inttrim1275068932public static final inttrycmd364558public static final inttwistedsheets603979968public static final inttype1140850696public static final intunaryMinus268435648public static final intunbind4164public static final intundo536870928public static final intundomove4165public static final intunitcell1814695966public static final intunitcellcolor545259586public static final intunitx1111490577public static final intunitxyz1145045006public static final intunity1111490578public static final intunitz1111490579public static final inturl1073742184public static final intuseminimizationthread603979970public static final intusenumberlocalization603979971public static final intuser1073742186public static final intusercolorscheme536870930public static final intval1073742188public static final intvalence1094715417public static final intvalidation1073742189public static final intvanderwaals1648363544public static final intvar36868public static final intvariable1073742190public static final intvariables1073742192public static final intvarray7public static final intvector135198public static final intvectorscale1648361473public static final intvectorscentered603979972public static final intvectorsymmetry603979973public static final intvectortrail553648185public static final intvertices1073742194public static final intvibration4166public static final intvibrationperiod570425412public static final intvibrationscale570425414public static final intvibx1111492626public static final intvibxyz1145047055public static final intviby1111492627public static final intvibz1111492628public static final intvisible2097198public static final intvisualrange570425416public static final intvolume1312817669public static final intw1140850705public static final intwaitformoveto603979975public static final intwhilecmd102406public static final intwidth1073742196public static final intwindow536870932public static final intwindowcentered603979976public static final intwireframe659488public static final intwireframerotation603979977public static final intwithin134217759public static final intwrite134221856public static final intx1111492629public static final intxyz1145047050public static final inty1111492630public static final intz1111492631public static final intzap12297public static final intzdepth553648186public static final intzerobasedxyzrasmol603979978public static final intzoom4168public static final intzoomenabled603979980public static final intzoomheight603979982public static final intzoomlarge603979983public static final intzoomTo4170public static final intzshade603979984public static final intzshadepower553648190public static final intzslab553648188
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org.jmol.scriptext.CmdExt Modifier and Type Constant Field Value static final intERROR_invalidArgument22
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org.jmol.shape.Axes Modifier and Type Constant Field Value private static final floatMIN_AXIS_LEN1.5f -
org.jmol.shape.Echo Modifier and Type Constant Field Value private static final shortCOLOR10private static final java.lang.StringFONTFACE"Serif"private static final intFONTSIZE20 -
org.jmol.shape.Frank Modifier and Type Constant Field Value static final java.lang.StringdefaultFontName"SansSerif"static final intdefaultFontSize16static final java.lang.StringdefaultFontStyle"Plain"public static final intfrankMargin4 -
org.jmol.shape.Hover Modifier and Type Constant Field Value private static final java.lang.StringFONTFACE"SansSerif"private static final intFONTSIZE12private static final java.lang.StringFONTSTYLE"Plain" -
org.jmol.shape.Mesh Modifier and Type Constant Field Value public static final java.lang.StringPREVIOUS_MESH_ID"+PREVIOUS_MESH+" -
org.jmol.shape.MeshCollection Modifier and Type Constant Field Value public static final java.lang.StringPREVIOUS_MESH_ID"+PREVIOUS_MESH+" -
org.jmol.shape.Shape Modifier and Type Constant Field Value public static final floatRADIUS_MAX4.0f -
org.jmol.shape.Sticks Modifier and Type Constant Field Value private static final intMAX_BOND_CLICK_DISTANCE_SQUARED100
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org.jmol.shapebio.BioShape Modifier and Type Constant Field Value private static final doubleeightPiSquared1007895.6835208714865 -
org.jmol.shapebio.Trace Modifier and Type Constant Field Value private static final intPUTTY_AbsoluteLinear7private static final intPUTTY_AbsoluteNonlinear3private static final intPUTTY_ImpliedRMS8private static final intPUTTY_NormalizedLinear4private static final intPUTTY_NormalizedNonlinear0private static final intPUTTY_RelativeLinear5private static final intPUTTY_RelativeNonlinear1private static final intPUTTY_ScaledLinear6private static final intPUTTY_ScaledNonlinear2
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org.jmol.shapecgo.CGOMesh Modifier and Type Constant Field Value public static final intALPHA25public static final intALPHA_TRIANGLE17public static final intBEGIN2public static final intCHAR23public static final intCOLOR6public static final intCONE27public static final intCUSTOM_CYLINDER15public static final intCYLINDER9public static final intDISABLE13public static final intDOTWIDTH16public static final intELLIPSOID18public static final intENABLE12public static final intEND3public static final intFONT19public static final intFONT_AXES22public static final intFONT_SCALE20public static final intFONT_VERTEX21public static final intGL_LINE_LOOP2public static final intGL_LINE_STRIP3public static final intGL_LINES1public static final intGL_POINTS0public static final intGL_TRIANGLE_FAN6public static final intGL_TRIANGLE_STRIP5public static final intGL_TRIANGLES4public static final intINDENT24public static final intJMOL_DIAMETER-100public static final intJMOL_PS-103public static final intJMOL_SCREEN-101public static final intJMOL_UVMAP-102private static final java.lang.StringKEY_LIST"BEGIN:2 END:3 STOP:0 POINT:0 POINTS:0 LINES:1 LINE_LOOP:2 LINE_STRIP:3 TRIANGLES:4 TRIANGLE_STRIP:5 TRIANGLE_FAN:6 LINE:1 VERTEX:4 NORMAL:5 COLOR:6 LINEWIDTH:10 SAUSAGE:14 DIAMETER:-100 SCREEN:-101 UVMAP:-102 PS:-103 NEWPATH:-104 CLOSEPATH:-105 STROKE:-106 SETLINEWIDTH:-107 SCALE:-108 MOVETO:-109 LINETO:-110 SHOWPAGE:-111"public static final intLINEWIDTH10public static final intNORMAL5public static final intPICK_COLOR29public static final intPS_CLOSEPATH-105public static final intPS_LINETO-110public static final intPS_MOVETO-109public static final intPS_NEWPATH-104public static final intPS_SCALE-108public static final intPS_SETLINEWIDTH-107public static final intPS_SHOWPAGE-111public static final intPS_STROKE-106public static final intQUADRIC26public static final intRESET_NORMAL28public static final intSAUSAGE14public static final intSIMPLE_LINE1public static final intSPHERE7public static final intSTOP0public static final intTRICOLOR_TRIANGLE8public static final intVERTEX4public static final intWIDTHSCALE11
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org.jmol.shapespecial.Dipole Modifier and Type Constant Field Value static final shortDIPOLE_TYPE_ATOMS2static final shortDIPOLE_TYPE_BOND3static final shortDIPOLE_TYPE_MOLECULAR4static final shortDIPOLE_TYPE_POINTS1static final shortDIPOLE_TYPE_POINTVECTOR5static final shortDIPOLE_TYPE_UNKNOWN0 -
org.jmol.shapespecial.Dipoles Modifier and Type Constant Field Value static final shortDEFAULT_MAD10static final floatDEFAULT_OFFSETSIDE0.4000000059604645fprivate static final floatE_ANG_PER_DEBYE0.20819400250911713f -
org.jmol.shapespecial.Dots Modifier and Type Constant Field Value static final floatSURFACE_DISTANCE_FOR_CALCULATION10.0f -
org.jmol.shapespecial.Draw Modifier and Type Constant Field Value private static final intMAX_OBJECT_CLICK_DISTANCE_SQUARED100private static final intPT_BITSET3private static final intPT_COORD1private static final intPT_IDENTIFIER2private static final intPT_MODEL_BASED_POINTS5private static final intPT_MODEL_INDEX4 -
org.jmol.shapespecial.Ellipsoids Modifier and Type Constant Field Value private static final java.lang.StringPROPERTY_MODES"ax ce co de eq mo on op sc tr" -
org.jmol.shapespecial.Polyhedra Modifier and Type Constant Field Value private static final floatCONVEX_HULL_MAX0.05000000074505806fprivate static final floatDEFAULT_FACECENTEROFFSET0.25fprivate static final floatDEFAULT_PLANAR_PARAM0.9800000190734863fpublic static final intEDGES_ALL1public static final intEDGES_FRONT2private static final intEDGES_NONE0private static final intFACE_COUNT_MAX247private static final intMAX_OTHER498private static final intMAX_VERTICES250private static final intMODE_BITSET4private static final intMODE_BONDING1private static final intMODE_INFO6private static final intMODE_POINTS2private static final intMODE_RADIUS3private static final intMODE_UNITCELL5
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org.jmol.shapesurface.Isosurface Modifier and Type Constant Field Value private static final intMAX_OBJECT_CLICK_DISTANCE_SQUARED100
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org.jmol.smiles.org.jmol.smiles.PolyhedronStereoSorter Modifier and Type Constant Field Value private static final floatMIN_ALIGNED0.1745329201221466f -
org.jmol.smiles.SmilesAtom Modifier and Type Constant Field Value static final java.lang.StringUNBRACKETED_SET"B, C, N, O, P, S, F, Cl, Br, I, *," -
org.jmol.smiles.SmilesBond Modifier and Type Constant Field Value private static final java.lang.StringALL_BONDS"-=#$:/\\.~^`+!,&;@"private static final java.lang.StringSMILES_BONDS"-=#$:/\\.~^`"public static final intTYPE_ANY81public static final intTYPE_AROMATIC17public static final intTYPE_BIO_CROSSLINK112public static final intTYPE_BIO_SEQUENCE96public static final intTYPE_NONE0public static final intTYPE_RING65public static final intTYPE_UNKNOWN-1 -
org.jmol.smiles.SmilesMatcher Modifier and Type Constant Field Value private static final intMODE_ARRAY2private static final intMODE_ATROP4private static final intMODE_BITSET1private static final intMODE_MAP3 -
org.jmol.smiles.SmilesMeasure Modifier and Type Constant Field Value private static final floatradiansPerDegree0.01745329238474369fstatic final java.lang.StringTYPES"__dat" -
org.jmol.smiles.SmilesSearch Modifier and Type Constant Field Value private static final intSUBMODE_NESTED1private static final intSUBMODE_OR3private static final intSUBMODE_RINGCHECK2 -
org.jmol.smiles.SmilesStereo Modifier and Type Constant Field Value public static final intALLENE2public static final intDEFAULT0public static final intOCTAHEDRAL6public static final intPOLYHEDRAL1public static final intSEESAW9public static final intSQUARE_PLANAR7public static final intT_SHAPED8public static final intTETRAHEDRAL4public static final intTRIGONAL_BIPYRAMIDAL5public static final intTRIGONAL_PYRAMIDAL3
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org.jmol.symmetry.org.jmol.symmetry.PointGroup Modifier and Type Constant Field Value private static final intATOM_COUNT_MAX100private static final intc216private static final intc317private static final intc418private static final intc519private static final intc620private static final intc822private static final intfirstProper14static final intOPERATION_IMPROPER_AXIS2static final intOPERATION_INVERSION_CENTER3static final intOPERATION_PLANE0static final intOPERATION_PROPER_AXIS1private static final ints1010private static final ints1212private static final ints33private static final ints44private static final ints55private static final ints66private static final ints88 -
org.jmol.symmetry.org.jmol.symmetry.SpaceGroup Modifier and Type Constant Field Value private static final intNAME_HALL5private static final intNAME_HM3private static final intNAME_UNK0 -
org.jmol.symmetry.org.jmol.symmetry.UnitCell Modifier and Type Constant Field Value private static final doubletwoP219.739208802178716
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org.jmol.thread.JmolThread Modifier and Type Constant Field Value protected static final intCHECK11protected static final intCHECK22protected static final intCHECK33protected static final intFINISH-2protected static final intINIT-1protected static final intMAIN0
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org.jmol.util.C Modifier and Type Constant Field Value public static final intALPHA_SHIFT13public static final shortBLACK4public static final shortBLUE7public static final shortCHANGEABLE_MASK-32768public static final shortCYAN9public static final shortGOLD23public static final shortGRAY12public static final shortGREEN11public static final shortHOTPINK22public static final shortINHERIT_ALL0public static final shortINHERIT_COLOR1public static final intLAST_AVAILABLE_COLIX2047public static final shortLIME14public static final shortMAGENTA20public static final shortMAROON15public static final shortNAVY16public static final shortOLIVE17public static final shortOPAQUE_MASK-30721public static final shortORANGE5public static final shortPINK6public static final shortPURPLE18public static final shortRAW_RGB3private static final intRAW_RGB_INT3public static final shortRED10public static final shortSILVER13public static final shortSPECIAL_COLIX_MAX4public static final shortTEAL19public static final intTRANSLUCENT_MASK30720public static final intTRANSLUCENT_SCREENED30720public static final intTRANSLUCENT_SHIFT11public static final intTRANSPARENT16384public static final shortUNMASK_CHANGEABLE_TRANSLUCENT2047public static final shortUSE_PALETTE2public static final shortWHITE8public static final shortYELLOW21 -
org.jmol.util.ColorEncoder Modifier and Type Constant Field Value public static final intALT16public static final intAMINO5public static final intBGYOR1public static final intBW10public static final intBWR7private static final java.lang.StringBYELEMENT_JMOL"byelement_jmol"public static final java.lang.StringBYELEMENT_PREFIX"byelement"private static final java.lang.StringBYELEMENT_RASMOL"byelement_rasmol"private static final java.lang.StringBYRESIDUE_AMINO"byresidue_amino"public static final java.lang.StringBYRESIDUE_PREFIX"byresidue"private static final java.lang.StringBYRESIDUE_SHAPELY"byresidue_shapely"public static final intCUSTOM-1public static final intFRIENDLY12private static final intGRAY-8355712public static final intHIGH9public static final intINHERIT15public static final intJMOL2public static final intLOW8public static final intRASMOL3public static final intRESU-14public static final intROYGB0public static final intRWB6public static final intSHAPELY4public static final intUSER-13public static final intWB11 -
org.jmol.util.CommandHistory Modifier and Type Constant Field Value static final intDEFAULT_MAX_SIZE100public static final java.lang.StringERROR_FLAG"#??"public static final java.lang.StringNOHISTORYATALL_FLAG"#----"public static final java.lang.StringNOHISTORYLINE_FLAG"#--" -
org.jmol.util.Edge Modifier and Type Constant Field Value private static final intATROPISOMER_SHIFT11public static final intBOND_AROMATIC515public static final intBOND_AROMATIC_DOUBLE514public static final intBOND_AROMATIC_MASK512public static final intBOND_AROMATIC_SINGLE513public static final intBOND_COVALENT_DOUBLE2public static final intBOND_COVALENT_MASK1023public static final intBOND_COVALENT_QUADRUPLE4public static final intBOND_COVALENT_SINGLE1public static final intBOND_COVALENT_TRIPLE3public static final intBOND_H_CALC4096public static final intBOND_H_CALC_MASK28672public static final intBOND_H_MINUS_314336public static final intBOND_H_MINUS_416384public static final intBOND_H_NUCLEOTIDE18432public static final intBOND_H_PLUS_26144public static final intBOND_H_PLUS_38192public static final intBOND_H_PLUS_410240public static final intBOND_H_PLUS_512288public static final intBOND_H_REGULAR2048public static final intBOND_HBOND_SHIFT11public static final intBOND_HYDROGEN_MASK30720public static final intBOND_NEW131072public static final intBOND_ORDER_ANY65535public static final intBOND_ORDER_NULL131071public static final intBOND_ORDER_UNSPECIFIED17public static final intBOND_PARTIAL_MASK224public static final intBOND_PARTIAL0133public static final intBOND_PARTIAL1266public static final intBOND_PARTIAL2397public static final intBOND_PARTIAL32100public static final intBOND_PYMOL_MULT98304public static final intBOND_PYMOL_NOMULT65536public static final intBOND_RENDER_SINGLE65536public static final intBOND_STEREO_FAR1041public static final intBOND_STEREO_MASK1024public static final intBOND_STEREO_NEAR1025public static final intBOND_STRUT32768public static final intBOND_SULFUR_MASK256public static final intTYPE_ATROPISOMER65537public static final intTYPE_ATROPISOMER_REV65538 -
org.jmol.util.Elements Modifier and Type Constant Field Value public static final intfirstIsotope4public static final intFORMAL_CHARGE_MAX7public static final intFORMAL_CHARGE_MIN-4private static final java.lang.StringnaturalIsotopes"1H,12C,14N,"public static final intRAD_COV_BODR_2014_02_221public static final intRAD_COV_IONIC_OB1_100_10public static final java.lang.StringVdwPROBE"#VDW radii for PROBE;{_H}.vdw = 1.0;{_H and connected(_C) and not connected(within(smiles,\'[a]\'))}.vdw = 1.17;{_C}.vdw = 1.75;{_C and connected(3) and connected(_O)}.vdw = 1.65;{_N}.vdw = 1.55;{_O}.vdw = 1.4;{_P}.vdw = 1.8;{_S}.vdw = 1.8;message VDW radii for H, C, N, O, P, and S set according to Word, et al., J. Mol. Biol. (1999) 285, 1711-1733" -
org.jmol.util.GData Modifier and Type Constant Field Value public static final byteENDCAPS_FLAT2public static final byteENDCAPS_FLAT_TO_SPHERICAL5public static final byteENDCAPS_HIDDEN1public static final byteENDCAPS_NONE0public static final byteENDCAPS_OPEN_TO_SPHERICAL4public static final byteENDCAPS_SPHERICAL3public static final intEXPORT_CARTESIAN1public static final intEXPORT_NOT0public static final intEXPORT_RAYTRACER2public static final intHUGE-1public static final intxGT4public static final intxLT8public static final intyGT1public static final intyLT2public static final intzGT16public static final intzLT32 -
org.jmol.util.GenericApplet Modifier and Type Constant Field Value private static final intSCRIPT_CHECK0private static final intSCRIPT_NOWAIT2private static final intSCRIPT_WAIT1 -
org.jmol.util.Geodesic Modifier and Type Constant Field Value private static final intmaxLevel3private static final floatoneFifth1.2566370964050293fprivate static final floatoneTenth0.6283185482025146fpublic static final intstandardLevel3private static final booleanVALIDATEtrue -
org.jmol.util.Logger Modifier and Type Constant Field Value public static final intLEVEL_DEBUG5public static final intLEVEL_DEBUGHIGH6public static final intLEVEL_ERROR2public static final intLEVEL_FATAL1public static final intLEVEL_INFO4public static final intLEVEL_MAX7public static final intLEVEL_WARN3 -
org.jmol.util.MeshCapper Modifier and Type Constant Field Value private static final intASCENDER1private static final intDESCENDER0private static final intLAST2 -
org.jmol.util.MeshSurface Modifier and Type Constant Field Value public static final intP_CHECK3public static final intP_CONTOUR4public static final intP_EXPLICIT_COLOR4protected static final intSEED_COUNT25 -
org.jmol.util.Modulation Modifier and Type Constant Field Value private static final doubleTWOPI6.283185307179586public static final charTYPE_DISP_FOURIER102public static final charTYPE_DISP_LEGENDRE108public static final charTYPE_DISP_SAWTOOTH115public static final charTYPE_OCC_CRENEL99public static final charTYPE_OCC_FOURIER111public static final charTYPE_SPIN_FOURIER109public static final charTYPE_SPIN_SAWTOOTH116public static final charTYPE_U_FOURIER117public static final charTYPE_U_LEGENDRE76 -
org.jmol.util.Normix Modifier and Type Constant Field Value private static final intNORMIX_GEODESIC_LEVEL3public static final shortNORMIX_NULL9999 -
org.jmol.util.Shader Modifier and Type Constant Field Value public static final intmaxSphereCache128private static final intSDIM40public static final intSHADE_INDEX_LAST63private static final intSHADE_INDEX_MAX64public static final byteSHADE_INDEX_NOISY_LIMIT56public static final byteSHADE_INDEX_NORMAL52private static final intSLIM20 -
org.jmol.util.SimpleUnitCell Modifier and Type Constant Field Value public static final intINFO_A0public static final intINFO_ALPHA3public static final intINFO_B1public static final intINFO_BETA4public static final intINFO_C2public static final intINFO_DIMENSIONS6public static final intINFO_GAMMA5public static final floatSLOP0.019999999552965164fprivate static final floatSLOP10.9800000190734863fprotected static final floattoRadians0.01745329238474369f -
org.jmol.util.TempArray Modifier and Type Constant Field Value private static final intfreeEnumSize2private static final intfreePointsSize6private static final intfreeScreensSize6 -
org.jmol.util.Tensor Modifier and Type Constant Field Value private static final java.lang.StringinfoList";.............;eigenvalues..;eigenvectors.;asymmatrix...;symmatrix....;value........;isotropy.....;anisotropy...;asymmetry....;eulerzyz.....;eulerzxz.....;quaternion...;indices......;string.......;type.........;id...........;span.........;skew........."private static final floatINTERACTION_FACTOR0.03999999910593033fprivate static final java.lang.StringKNOWN_TYPES";iso........;adp........;tls-u......;tls-r......;ms.........;efg........;isc........;charge.....;quadrupole."private static final floatMAGNETIC_SUSCEPTIBILITY_FACTOR0.009999999776482582fpublic static final intTYPE_ADP1public static final intTYPE_CHARGE7public static final intTYPE_EFG5public static final intTYPE_ISC6public static final intTYPE_ISO0public static final intTYPE_MS4public static final intTYPE_OTHER-1public static final intTYPE_QUADRUPOLE8public static final intTYPE_TLS_R3public static final intTYPE_TLS_U2 -
org.jmol.util.Vibration Modifier and Type Constant Field Value protected static final doubletwoPI6.283185307179586public static final intTYPE_SPIN-2public static final intTYPE_VIBRATION-1
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org.jmol.viewer.ActionManager Modifier and Type Constant Field Value public static final intACTION_assignNew0public static final intACTION_center1public static final intACTION_clickFrank2public static final intACTION_connectAtoms3public static final intACTION_count47public static final intACTION_deleteAtom4public static final intACTION_deleteBond5public static final intACTION_depth6public static final intACTION_dragAtom7public static final intACTION_dragDrawObject8public static final intACTION_dragDrawPoint9public static final intACTION_dragLabel10public static final intACTION_dragMinimize11public static final intACTION_dragMinimizeMolecule12public static final intACTION_dragSelected13public static final intACTION_dragZ14public static final intACTION_multiTouchSimulation15public static final intACTION_navTranslate16public static final intACTION_pickAtom17public static final intACTION_pickIsosurface18public static final intACTION_pickLabel19public static final intACTION_pickMeasure20public static final intACTION_pickNavigate21public static final intACTION_pickPoint22public static final intACTION_popupMenu23public static final intACTION_reset24public static final intACTION_rotate25public static final intACTION_rotateBranch26public static final intACTION_rotateSelected27public static final intACTION_rotateZ28public static final intACTION_rotateZorZoom29public static final intACTION_select30public static final intACTION_selectAndDrag31public static final intACTION_selectAndNot32public static final intACTION_selectNone33public static final intACTION_selectOr34public static final intACTION_selectToggle35public static final intACTION_selectToggleExtended36public static final intACTION_setMeasure37public static final intACTION_slab38public static final intACTION_slabAndDepth39public static final intACTION_slideZoom40public static final intACTION_spinDrawObjectCCW41public static final intACTION_spinDrawObjectCW42public static final intACTION_stopMotion43public static final intACTION_swipe44public static final intACTION_translate45public static final intACTION_wheelZoom46public static final floatDEFAULT_GESTURE_SWIPE_FACTOR1.0fpublic static final floatDEFAULT_MOUSE_DRAG_FACTOR1.0fpublic static final floatDEFAULT_MOUSE_WHEEL_FACTOR1.149999976158142fprivate static final longMAX_DOUBLE_CLICK_MILLIS700Lprotected static final longMININUM_GESTURE_DELAY_MILLISECONDS10Lpublic static final intPICKING_ASSIGN_ATOM32public static final intPICKING_ASSIGN_BOND33public static final intPICKING_CENTER3public static final intPICKING_CONNECT24public static final intPICKING_DELETE_ATOM7public static final intPICKING_DELETE_BOND8public static final intPICKING_DRAG_ATOM28public static final intPICKING_DRAG_LIGAND36public static final intPICKING_DRAG_MINIMIZE29public static final intPICKING_DRAG_MINIMIZE_MOLECULE30public static final intPICKING_DRAG_MOLECULE27public static final intPICKING_DRAG_SELECTED26public static final intPICKING_DRAW4public static final intPICKING_IDENTIFY1public static final intPICKING_IDENTIFY_BOND35public static final intPICKING_INVERT_STEREO31public static final intPICKING_LABEL2public static final intPICKING_MEASURE18public static final intPICKING_MEASURE_ANGLE20public static final intPICKING_MEASURE_DISTANCE19public static final intPICKING_MEASURE_SEQUENCE22public static final intPICKING_MEASURE_TORSION21public static final intPICKING_NAVIGATE23public static final intPICKING_OFF0public static final intPICKING_ROTATE_BOND34public static final intPICKING_SELECT_ATOM9public static final intPICKING_SELECT_CHAIN11public static final intPICKING_SELECT_ELEMENT17public static final intPICKING_SELECT_GROUP10public static final intPICKING_SELECT_MODEL16public static final intPICKING_SELECT_MOLECULE12public static final intPICKING_SELECT_POLYMER13public static final intPICKING_SELECT_SITE15public static final intPICKING_SELECT_STRUCTURE14public static final intPICKING_SPIN5public static final intPICKING_STRUTS25public static final intPICKING_SYMMETRY6public static final intPICKINGSTYLE_MEASURE_OFF5public static final intPICKINGSTYLE_MEASURE_ON4public static final intPICKINGSTYLE_SELECT_CHIME0public static final intPICKINGSTYLE_SELECT_DRAG3public static final intPICKINGSTYLE_SELECT_JMOL0public static final intPICKINGSTYLE_SELECT_PFAAT2public static final intPICKINGSTYLE_SELECT_RASMOL1private static final intSLIDE_ZOOM_X_PERCENT98 -
org.jmol.viewer.AnimationManager Modifier and Type Constant Field Value static final intFRAME_FIRST-1static final intFRAME_LAST1static final intMODEL_CURRENT0 -
org.jmol.viewer.FileManager Modifier and Type Constant Field Value private static final java.lang.StringDELPHI_BINARY_MAGIC_NUMBER"\u0014\u0000\u0000\u0000"public static final java.lang.StringJPEG_CONTINUE_STRING" #Jmol...\u0000"public static final java.lang.StringPMESH_BINARY_MAGIC_NUMBER"PM\u0001\u0000" -
org.jmol.viewer.JC Modifier and Type Constant Field Value public static final java.lang.StringADD_HYDROGEN_TITLE"Viewer.AddHydrogens"public static final java.lang.StringallowedQuaternionFrames"RC;RP;a;b;c;n;p;q;x;"public static final intALPHA_CARBON_VISIBILITY_FLAG1040384public static final floatANGSTROMS_PER_BOHR0.529177188873291fpublic static final intargbsIsosurfaceNegative-6283184public static final intargbsIsosurfacePositive-11525984public static final byteATOMID_ALPHA_CARBON2public static final intATOMID_ALPHA_ONLY_MASK4public static final byteATOMID_AMINO_NITROGEN1public static final byteATOMID_C1_PRIME12public static final byteATOMID_C233public static final byteATOMID_C2_PRIME11public static final byteATOMID_C3_PRIME9public static final byteATOMID_C435public static final byteATOMID_C4_PRIME8public static final byteATOMID_C536public static final byteATOMID_C5_PRIME7public static final byteATOMID_C5M45public static final byteATOMID_C637public static final byteATOMID_C749public static final byteATOMID_C840public static final byteATOMID_CARBONYL_CARBON3public static final byteATOMID_CARBONYL_OD114public static final byteATOMID_CARBONYL_OD215public static final byteATOMID_CARBONYL_OE116public static final byteATOMID_CARBONYL_OE217public static final byteATOMID_CARBONYL_OXYGEN4public static final intATOMID_DISTINGUISHING_ATOM_MAX14public static final byteATOMID_H3T_TERMINUS88public static final byteATOMID_H5T_TERMINUS72public static final byteATOMID_HO3_PRIME89public static final byteATOMID_HO5_PRIME90public static final byteATOMID_N132public static final byteATOMID_N243public static final byteATOMID_N334public static final byteATOMID_N442public static final byteATOMID_N644public static final byteATOMID_N739public static final byteATOMID_N941public static final intATOMID_NUCLEIC_MASK8128public static final byteATOMID_NUCLEIC_PHOSPHORUS13public static final byteATOMID_O15public static final byteATOMID_O1P74public static final byteATOMID_O238public static final byteATOMID_O2_PRIME79public static final byteATOMID_O2P76public static final byteATOMID_O3_PRIME10public static final byteATOMID_O447public static final byteATOMID_O4_PRIME78public static final byteATOMID_O5_PRIME6public static final byteATOMID_O5T_TERMINUS73public static final byteATOMID_O646public static final byteATOMID_OP175public static final byteATOMID_OP277public static final intATOMID_PHOSPHORUS_ONLY_MASK8192public static final intATOMID_PROTEIN_MASK14public static final byteATOMID_S448public static final byteATOMID_TERMINATING_OXT64public static final intAXES_DEFAULT_FONTSIZE14public static final java.lang.StringCACTUS_FILE_TYPES";alc;cdxml;cerius;charmm;cif;cml;ctx;gjf;gromacs;hyperchem;jme;maestro;mol;mol2;sybyl2;mrv;pdb;sdf;sdf3000;sln;smiles;xyz;"public static final java.lang.Stringcopyright"(C) 2015 Jmol Development"public static final shortDEFAULT_BOND_MILLIANGSTROM_RADIUS150public static final floatDEFAULT_BOND_RADIUS0.15000000596046448fpublic static final floatDEFAULT_BOND_TOLERANCE0.44999998807907104fpublic static final java.lang.StringDEFAULT_FONTFACE"SansSerif"public static final java.lang.StringDEFAULT_FONTSTYLE"Plain"public static final java.lang.StringDEFAULT_HELP_PATH"http://chemapps.stolaf.edu/jmol/docs/index.htm"public static final floatDEFAULT_MAX_CONNECT_DISTANCE1.0E8fpublic static final floatDEFAULT_MIN_BOND_DISTANCE0.4000000059604645fpublic static final floatDEFAULT_MIN_CONNECT_DISTANCE0.10000000149011612fpublic static final intDEFAULT_PERCENT_VDW_ATOM23public static final floatDEFAULT_STRUT_RADIUS0.30000001192092896fpublic static final intDNA_MASK65480public static final intECHO_BOTTOM1public static final intECHO_MIDDLE2public static final intECHO_TOP0public static final intECHO_XY3public static final intECHO_XYZ4public static final java.lang.StringEMBEDDED_SCRIPT_TAG"**** Jmol Embedded Script ****"public static final floatENC_CALC_MAX_DIST3.0fpublic static final intENV_CALC_MAX_LEVEL3public static final java.lang.StringEXPORT_DRIVER_LIST"Idtf;Maya;Povray;Vrml;X3d;Stl;Tachyon;Obj"public static final intGROUPID_AMINO_MAX24public static final intGROUPID_ARGININE2public static final intGROUPID_ASPARAGINE3public static final intGROUPID_ASPARTATE4public static final intGROUPID_CYSTEINE5public static final intGROUPID_GLUTAMATE7public static final intGROUPID_GLUTAMINE6public static final intGROUPID_HISTIDINE9private static final intGROUPID_ION_MAX48private static final intGROUPID_ION_MIN46public static final intGROUPID_LYSINE12public static final intGROUPID_NUCLEIC_MAX42public static final intGROUPID_PROLINE15public static final intGROUPID_SOLVENT_MIN45public static final intGROUPID_TRYPTOPHAN19public static final intGROUPID_WATER42public static final java.lang.StringIMAGE_OR_SCENE";jpg;jpeg;jpg64;jpeg64;gif;gift;pdf;ppm;png;pngj;pngt;scene;"public static final java.lang.StringIMAGE_TYPES";jpg;jpeg;jpg64;jpeg64;gif;gift;pdf;ppm;png;pngj;pngt;"public static final java.lang.StringJPEG_EXTENSIONS";jpg;jpeg;jpg64;jpeg64;"public static final intJSV_CLOSE77public static final intJSV_NOT-1public static final intJSV_SELECT14public static final intJSV_SEND_C13SIMULATE35public static final intJSV_SEND_H1SIMULATE28public static final intJSV_SEND_JDXMOL0public static final intJSV_SETPEAKS7public static final intJSV_STRUCTURE21private static final intLABEL_CENTERED256public static final intLABEL_DEFAULT_FONTSIZE13public static final intLABEL_DEFAULT_X_OFFSET4public static final intLABEL_DEFAULT_Y_OFFSET4private static final intLABEL_EXPLICIT64public static final intLABEL_FLAGS63private static final intLABEL_FLAGX_OFFSET_SHIFT21private static final intLABEL_FLAGY_OFFSET_SHIFT11public static final intLABEL_MAXIMUM_FONTSIZE63public static final intLABEL_MINIMUM_FONTSIZE6private static final intLABEL_OFFSET_MASK1023public static final intLABEL_OFFSET_MAX500public static final intLABEL_POINTER_BACKGROUND2private static final intLABEL_POINTER_FLAGS3public static final intLABEL_POINTER_NONE0public static final intLABEL_POINTER_ON1private static final intLABEL_ZPOS_FLAGS48public static final intLABEL_ZPOS_FRONT32public static final intLABEL_ZPOS_GROUP16public static final java.lang.StringLOAD_ATOM_DATA_TYPES";xyz;vxyz;vibration;temperature;occupancy;partialcharge;"public static final shortmadMultipleBondSmallMaximum500public static final intMAXIMUM_AUTO_BOND_COUNT20public static final intMEASURE_DEFAULT_FONTSIZE15public static final intMINIMIZATION_ATOM_MAX200public static final floatMINIMIZE_FIXED_RANGE5.0fpublic static final java.lang.StringMODELKIT_ZAP_STRING"5\n\nC 0 0 0\nH .63 .63 .63\nH -.63 -.63 .63\nH -.63 .63 -.63\nH .63 -.63 -.63"public static final java.lang.StringMODELKIT_ZAP_TITLE"Jmol Model Kit"public static final intMOUSE_NONE-1public static final byteMULTIBOND_ALWAYS3public static final byteMULTIBOND_NEVER0public static final byteMULTIBOND_NOTSMALL2public static final byteMULTIBOND_WIREFRAME1public static final intNBO_CONFIG70public static final intNBO_MODEL42public static final intNBO_RUN49public static final intNBO_SEARCH63public static final intNBO_VIEW56public static final java.lang.StringNOTE_SCRIPT_FILE"NOTE: file recognized as a script file: "public static final booleanofficialReleasefalsepublic static final java.lang.StringPDB_ANNOTATIONS";dssr;rna3d;dom;val;"public static final intPURINE_MASK153957public static final intPYRIMIDINE_MASK108186public static final floatradiansPerDegree0.01745329238474369fpublic static final java.lang.StringREPAINT_IGNORE"\u0001## REPAINT_IGNORE ##"public static final intRNA_MASK196663public static final java.lang.StringSCRIPT_COMPLETED"Script completed"public static final java.lang.StringSCRIPT_EDITOR_IGNORE"\u0001## EDITOR_IGNORE ##"public static final intSHAPE_AXES34public static final intSHAPE_BACKBONE9public static final intSHAPE_BALLS0public static final intSHAPE_BBCAGE32public static final intSHAPE_CARTOON11public static final intSHAPE_CGO23public static final intSHAPE_CONTACT25public static final intSHAPE_DIPOLES17public static final intSHAPE_DOTS16public static final intSHAPE_DRAW22public static final intSHAPE_ECHO31public static final intSHAPE_ELLIPSOIDS20public static final intSHAPE_FRANK36public static final intSHAPE_GEOSURFACE19public static final intSHAPE_HALOS8public static final intSHAPE_HOVER35public static final intSHAPE_HSTICKS2public static final intSHAPE_ISOSURFACE24public static final intSHAPE_LABELS5private static final intSHAPE_LAST_ATOM_VIS_FLAG26public static final intSHAPE_LCAOCARTOON26public static final intSHAPE_MAX37public static final intSHAPE_MAX_HAS_ID32public static final intSHAPE_MAX_HAS_SETVIS33public static final intSHAPE_MAX_MESH_COLLECTION30public static final intSHAPE_MAX_SECONDARY16public static final intSHAPE_MAX_SIZE_ZERO_ON_RESTRICT21public static final intSHAPE_MAX_SPECIAL23public static final intSHAPE_MAX_SURFACE30public static final intSHAPE_MEASURES6public static final intSHAPE_MESHRIBBON13public static final intSHAPE_MIN_HAS_ID21public static final intSHAPE_MIN_HAS_SETVIS8public static final intSHAPE_MIN_SECONDARY9public static final intSHAPE_MIN_SPECIAL16public static final intSHAPE_MIN_SURFACE24public static final intSHAPE_MO27public static final intSHAPE_NBO28public static final intSHAPE_PLOT3D30public static final intSHAPE_PMESH29public static final intSHAPE_POLYHEDRA21public static final intSHAPE_RIBBONS14public static final intSHAPE_ROCKETS15public static final intSHAPE_SSSTICKS3public static final intSHAPE_STARS7public static final intSHAPE_STICKS1public static final intSHAPE_STRANDS12public static final intSHAPE_STRUTS4public static final intSHAPE_TRACE10public static final intSHAPE_UCCAGE33public static final intSHAPE_VECTORS18public static final intSMILES_AROMATIC_DEFINED128public static final intSMILES_AROMATIC_DOUBLE512public static final intSMILES_AROMATIC_MMFF94768public static final intSMILES_AROMATIC_PLANAR1024public static final intSMILES_AROMATIC_STRICT256public static final intSMILES_FIRST_MATCH_ONLY8public static final intSMILES_GEN_ATOM_COMMENT131072public static final intSMILES_GEN_BIO1048576public static final intSMILES_GEN_BIO_ALLOW_UNMATCHED_RINGS3145728public static final intSMILES_GEN_BIO_COMMENT17825792public static final intSMILES_GEN_BIO_COV_CROSSLINK5242880public static final intSMILES_GEN_BIO_HH_CROSSLINK9437184public static final intSMILES_GEN_BIO_NOCOMMENTS34603008public static final intSMILES_GEN_EXPLICIT_H4096public static final intSMILES_GEN_POLYHEDRAL65536public static final intSMILES_GEN_TOPOLOGY8192public static final intSMILES_GROUP_BY_MODEL67108864public static final intSMILES_IGNORE_ATOM_CLASS2048public static final intSMILES_IGNORE_STEREOCHEMISTRY32public static final intSMILES_INVERT_STEREOCHEMISTRY64public static final intSMILES_NO_AROMATIC16public static final intSMILES_TYPE_OPENSMARTS7public static final intSMILES_TYPE_OPENSMILES5public static final intSMILES_TYPE_SMARTS2public static final intSMILES_TYPE_SMILES1public static final java.lang.StringSTATE_VERSION_STAMP"# Jmol state version "public static final intTEXT_ALIGN_CENTER8private static final intTEXT_ALIGN_FLAGS12public static final intTEXT_ALIGN_LEFT4public static final intTEXT_ALIGN_NONE0public static final intTEXT_ALIGN_RIGHT12private static final intTEXT_ALIGN_SHIFT2public static final intUNITID_ATOM4public static final intUNITID_INSCODE8public static final intUNITID_MODEL1public static final intUNITID_RESIDUE2public static final intUNITID_TRIM16public static final intVIS_BACKBONE_FLAG8192public static final intVIS_BALLS_FLAG16public static final intVIS_BOND_FLAG32public static final intVIS_CARTOON_FLAG32768public static final intVIS_LABEL_FLAG512public static final intXY_ZTOP100public static final java.lang.StringZAP_TITLE"zapped" -
org.jmol.viewer.MouseState Modifier and Type Constant Field Value private static final intMIN_DELAY_MS20 -
org.jmol.viewer.org.jmol.viewer.OutputManager Modifier and Type Constant Field Value protected static final java.lang.StringSCENE_TAG"###scene.spt###" -
org.jmol.viewer.PropertyManager Modifier and Type Constant Field Value private static final java.lang.StringatomExpression"<atom selection>"private static final intPROP_ANIMATION_INFO5private static final intPROP_APPLET_INFO0private static final intPROP_ATOM_INFO14private static final intPROP_AUXILIARY_INFO24private static final intPROP_BOND_INFO15private static final intPROP_BOUNDBOX_INFO25private static final intPROP_CENTER_INFO10private static final intPROP_CHAIN_INFO16private static final intPROP_CONSOLE_TEXT37private static final intPROP_COUNT45private static final intPROP_DATA_INFO26private static final intPROP_DOM_INFO42private static final intPROP_ERROR_MESSAGE33private static final intPROP_EVALUATE28private static final intPROP_EXTRACT_MODEL20private static final intPROP_FILE_INFO32private static final intPROP_FILECONTENTS4private static final intPROP_FILECONTENTS_PATH3private static final intPROP_FILEHEADER2private static final intPROP_FILENAME1private static final intPROP_IMAGE27private static final intPROP_ISOSURFACE_DATA36private static final intPROP_ISOSURFACE_INFO35private static final intPROP_JMOL_STATUS21private static final intPROP_JMOL_VIEWER22private static final intPROP_JSPECVIEW38private static final intPROP_LIGAND_INFO7private static final intPROP_MEASUREMENT_INFO9private static final intPROP_MENU29private static final intPROP_MESSAGE_QUEUE23private static final intPROP_MINIMIZATION_INFO30private static final intPROP_MODEL_INFO6private static final intPROP_MOLECULE_INFO18private static final intPROP_MOUSE_INFO34private static final intPROP_NMR_INFO40private static final intPROP_ORIENTATION_INFO11private static final intPROP_POINTGROUP_INFO31private static final intPROP_POLYMER_INFO17private static final intPROP_SCRIPT_QUEUE_INFO39private static final intPROP_SERVICE44private static final intPROP_SHAPE_INFO8private static final intPROP_STATE_INFO19private static final intPROP_TRANSFORM_INFO12private static final intPROP_VAL_INFO43private static final intPROP_VAR_INFO41 -
org.jmol.viewer.SelectionManager Modifier and Type Constant Field Value private static final intFALSE0private static final intTRUE1private static final intUNKNOWN-1 -
org.jmol.viewer.StateCreator Modifier and Type Constant Field Value private static final intMAX_ACTION_UNDO100 -
org.jmol.viewer.StateManager Modifier and Type Constant Field Value public static final intOBJ_AXIS11public static final intOBJ_AXIS22public static final intOBJ_AXIS33public static final intOBJ_BACKGROUND0public static final intOBJ_BOUNDBOX4public static final intOBJ_FRANK6public static final intOBJ_MAX7public static final intOBJ_UNITCELL5private static final java.lang.StringobjectNameList"background axis1 axis2 axis3 boundbox unitcell frank " -
org.jmol.viewer.StatusManager Modifier and Type Constant Field Value public static final intSYNC_DISABLE3public static final intSYNC_DRIVER1public static final intSYNC_ENABLE4public static final intSYNC_OFF0public static final intSYNC_SLAVE2public static final intSYNC_STEREO5 -
org.jmol.viewer.TransformManager Modifier and Type Constant Field Value static final floatDEFAULT_CAMERA_DEPTH3.0fstatic final intDEFAULT_NAV_FPS10static final booleanDEFAULT_PERSPECTIVE_DEPTHtruestatic final intDEFAULT_PERSPECTIVE_MODEL11static final intDEFAULT_SPIN_FPS30static final intDEFAULT_SPIN_Y30public static final intDEFAULT_STEREO_DEGREES-5public static final floatDEFAULT_VISUAL_RANGE5.0fpublic static final doubledegreesPerRadian57.29577951308232public static final intMAXIMUM_ZOOM_PERCENTAGE200000private static final intMAXIMUM_ZOOM_PERSPECTIVE_DEPTH10000public static final intMODE_NAVIGATION1public static final intMODE_PERSPECTIVE_PYMOL2public static final intMODE_STANDARD0public static final intNAV_MODE_IGNORE-2public static final intNAV_MODE_NEWXY2public static final intNAV_MODE_NEWXYZ3public static final intNAV_MODE_NEWZ4public static final intNAV_MODE_NONE0public static final intNAV_MODE_RESET1public static final intNAV_MODE_ZOOMED-1 -
org.jmol.viewer.TransformManager4D Modifier and Type Constant Field Value private static final intMODE_3D0private static final intMODE_4D_WX1private static final intMODE_4D_WY2private static final intMODE_4D_WZ3 -
org.jmol.viewer.Viewer Modifier and Type Constant Field Value public static final java.lang.StringSYNC_GRAPHICS_MESSAGE"GET_GRAPHICS"public static final java.lang.StringSYNC_NO_GRAPHICS_MESSAGE"SET_GRAPHICS_OFF"
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org.jmol.viewer.binding.Binding Modifier and Type Constant Field Value public static final intALT8public static final intBUTTON_MASK28public static final intBUTTON_MODIFIER_MASK63public static final intCLICK32768public static final intCOUNT_MASK768public static final intCTRL2public static final intCTRL_ALT10public static final intCTRL_SHIFT3public static final intDOUBLE512public static final intDOWN4096public static final intDRAG8192public static final intLEFT16public static final intMAC_COMMAND20public static final intMIDDLE8public static final intMODE_MASK61440public static final intRIGHT4public static final intSHIFT1public static final intSINGLE256public static final intUP16384public static final intWHEEL32
org.openscience.*
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org.openscience.jmol.app.jmolpanel.AtomSetChooser Modifier and Type Constant Field Value private static final floatAMPLITUDE_MAX1.0fprivate static final floatAMPLITUDE_PRECISION0.009999999776482582fprivate static final floatAMPLITUDE_VALUE0.5fstatic final java.lang.StringCOLLECTION"collection"static final java.lang.StringFF"ff"private static final intFPS_MAX30static final java.lang.StringNEXT"next"static final java.lang.StringPAUSE"pause"private static final floatPERIOD_MAX1.0fprivate static final floatPERIOD_PRECISION0.0010000000474974513fprivate static final floatPERIOD_VALUE0.5fstatic final java.lang.StringPLAY"play"static final java.lang.StringPREVIOUS"prev"private static final intRADIUS_MAX19private static final intRADIUS_VALUE3static final java.lang.StringREWIND"rewind"static final java.lang.StringSAVE"save"private static final floatSCALE_MAX2.0fprivate static final floatSCALE_PRECISION0.009999999776482582fprivate static final floatSCALE_VALUE1.0fstatic final java.lang.StringVECTOR"vector" -
org.openscience.jmol.app.jmolpanel.GaussianDialog Modifier and Type Constant Field Value private static final java.lang.StringDEFAULT_BASIS"3-21G**"private static final java.lang.StringDEFAULT_CHARGE"0"private static final java.lang.StringDEFAULT_METHOD"HF"private static final java.lang.StringDEFAULT_MULT"1"private static final java.lang.StringDFT_LIST"LSDA BLYP BP86 BPW91 OLYP OP86 OPW91 PBEPBE VSXC HCTH93 NCTH147 HCTH407 TPSSTPSS B3LYP B3PW91"private static final java.lang.StringNOBASIS_LIST"AM1 PM3 CNDO INDO MNDO MINDO3 ZINDO UFF AMBER DREIDING Huckel" -
org.openscience.jmol.app.jmolpanel.JmolPanel Modifier and Type Constant Field Value private static final java.lang.StringaboutAction"about"private static final java.lang.StringatomsetchooserAction"atomsetchooser"static final java.lang.StringchemFileProperty"chemFile"private static final java.lang.StringcloseAction"close"private static final java.lang.StringconsoleAction"console"private static final java.lang.StringcopyImageActionProperty"copyImage"private static final java.lang.StringcopyScriptActionProperty"copyScript"private static final java.lang.StringcreditsAction"credits"private static final java.lang.StringEDITOR_WINDOW_NAME"ScriptEditor"private static final java.lang.StringeditorAction"editor"private static final java.lang.StringexitAction"exit"private static final java.lang.StringexportActionProperty"export"private static final java.lang.StringFILE_OPEN_WINDOW_NAME"FileOpen"private static final java.lang.StringgaussianAction"gauss"private static final java.lang.StringnewAction"new"private static final java.lang.StringnewwinAction"newwin"private static final java.lang.StringopenAction"open"private static final java.lang.StringopenmolAction"openmol"private static final java.lang.StringopenpdbAction"openpdb"private static final java.lang.StringopenurlAction"openurl"private static final java.lang.StringpasteClipboardActionProperty"pasteClipboard"private static final java.lang.StringpovrayActionProperty"povray"private static final java.lang.StringprintActionProperty"print"private static final java.lang.StringrecentFilesAction"recentFiles"private static final java.lang.StringresizeAction"resize"private static final java.lang.StringSCRIPT_WINDOW_NAME"ScriptWindow"private static final java.lang.StringSURFACETOOL_WINDOW_NAME"SurfaceToolWindow"private static final java.lang.StringsurfaceToolActionProperty"surfaceTool"private static final java.lang.StringtoWebActionProperty"toweb"private static final java.lang.StringuguideAction"uguide"private static final java.lang.StringWEB_MAKER_WINDOW_NAME"JmolWebPageMaker"private static final java.lang.StringwhatsnewAction"whatsnew"private static final java.lang.StringwriteActionProperty"write" -
org.openscience.jmol.app.jmolpanel.org.openscience.jmol.app.jmolpanel.RecentFilesDialog Modifier and Type Constant Field Value private static final intMAX_FILES10 -
org.openscience.jmol.app.jmolpanel.Splash Modifier and Type Constant Field Value private static final intBORDERSIZE10private static final intSTATUSSIZE10
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org.openscience.jmol.app.jmolpanel.console.AppConsole Modifier and Type Constant Field Value public static final java.lang.StringALL_BUTTONS"Editor Variables Clear History State UndoRedo Close Font Help"
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org.openscience.jmol.app.nbo.org.openscience.jmol.app.nbo.NBODialogConfig Modifier and Type Constant Field Value protected static final java.lang.StringalterHelp"ALTER IA newval (nuclear charge of atom IA)\n IA IB newval (bond length IA-IB)\n IA IB IC newval (valence angle IA-IB-IC)\n IA IB IC ID newval (dihedral IA-IB-IC-IC)\n \nExamples:\n ALTER 10 14. [change atom 10 to Si (Z = 14)]\n ALTER 2 5 1.69 [change R(5-8) bond to 1.69A]\n ALTER 1 2 3 4 180. [change 1-2-3-4 dihedral\n angle to 180 degrees]\n \nNote that \'ALTER 1 2 3 4 180.\' changes ONLYthe 1-2-3-4 dihedral (often giving unphysicaldistorted geometry). Use \'TWIST 1 2 3 4 180.\'to form a proper torsional rotamer.\n \nUse VFILE to determine which angles can besafely ALTERed. Otherwise, the coordinatesmay be re-defined, with unexpected effectson other variables."protected static final java.lang.StringchbHelp"3CHB IA IB :Lig (form 3-center hyperbond\n IA-IB-Lig to ligand :Lig)\nExamples:\n SHOW W(:NH3)3 (normal-valent W triammine)\n 3CHB 1 2 :NH3 (hyperbonded N-W-N triad)\n SHOW H2O (water monomer)\n 3CHB 2 3 :OH2 (H-bonded water dimer)\n"protected static final java.lang.StringclipHelp"CLIP IA IB (erase bond between IA, IB)\n \nExample:\n CLIP 1 2 [erase bond between atoms 1,2]\n \nNote that CLIP takes no account of electronicrequirements for a Lewis-compliant model."protected static final java.lang.StringDEFAULT_PARAMS"PLOT CMO DIPOLE STERIC"static final intDIALOG_CONFIG0static final intDIALOG_LIST-1static final intDIALOG_MODEL10static final intDIALOG_RUN20static final intDIALOG_SEARCH40static final intDIALOG_VIEW30protected static final java.lang.StringfuseHelp"FUSE IA,IB (remove IA,IB and join the two\n \'dangling\' sites by a new bond)\n \nAllowed parameter:\n .r = ring-forming (conformational search)\n \nExamples:\n FUSE 4 12 [remove atoms 4, 12 and draw a new\n bond between resulting radical centers\n (e.g., 3-11), with no geometry change]\n FUSE.r 4 12 [similar, but a conformational\n search is performed to find the most\n suitable ring-closing geometry]\n \nNote that IA, IB must have similar valency, so\nthe resulting structure remains Lewis-compliant.\n"protected static final java.lang.StringhelpModel"NBOModel COMMAND SYNTAX\n \nCommand verbs are case-insensitive and canbe abbreviated by the leading unique characters.Arguments are separated by commas or spaces.Parameters are attached to the command verbafter a dot (viz., DRAW.ap MODEL). Argumentsand parameters are case-insensitive, exceptfor chemical formulas and group acronyms.Use \'HELP <command>\' (e.g., \'HELP SHOW\') forfurther specifics of each COMMAND type.\n \nCOMMAND(.t) arguments\n------------------------------------\nALTER IA [IB IC ID] newvalue\nCLIP IA IB\nDRAW filename\nFUSE(.R) IA IB\nHELP command\nLINK IA IB\nMUTATE IA formula\nREBOND IA symtype\nROTATE AXIS angle\nSAVE.t filename\nSHOW formula\nSWITCH IA IB\nSYMMETRY\nTRANSLATE AXIS shift\nTWIST IA IB IC ID newvalue\nUNIFY CFI1 CFI2 IA1 IB1 IA2 IB2 dist\nUSE.t filename\nVALUE IA [IB IC ID]\n3CHB IA IB :Ligand\n"protected static final java.lang.StringlinkHelp"LINK IA IB (draw a \'bond\' between atoms IA, IB)\nExamples:\n LINK 3 17 [draws a \'bond: between atoms 3-17\nNote that this command (unlike FUSE) takes no\naccount of chemical reasonability.\n"protected static final java.lang.StringmutateHelp"MUTATE IA formula (replace atom IA by the group\n of specified chemical \'formula\',\n if both are of consistent valency)\n \nExample:\n MUTATE 4 CH3 [remove monovalent atom 4 and\n attach a methyl (CH3) radical in its\n place, preserving valence consistency]\n"protected static final java.lang.StringrebondHelp"REBOND IA symtype (select a new Lewis valence\n isomer of \'symtype\' symmetry\n at transition metal atom IA)\n \nAllowed \'symtype\' parameters (TM species only):\n \n ML6 bonding: c3vo (\'Outer\' C3v [default])\n c3vi (\'Inner\' C3v symmetry)\n c5vo (\'Outer\' C5v symmetry)\n c5vi (\'Inner\' C5v symmetry)\n \n ML5 bonding: c4vo (\'Outer\' C4v [default])\n c4vi (\'Inner\' C4v symmetry)\n \n ML4 bonding: td (Td symmetry [default])\n c3vi (\'Inner\' C3v symmetry)\n c4v (C4v symmetry)\nExample:\n SHOW WH6 [Tungsten hexahydride, in ideal\n \'c3vo\' isomer geometry]\n REBOND 2 c5vi [reform preceding WH6 isomer\n to alternative \'inner C5v\'\n geometry at TM atom 2]\n"protected static final java.lang.StringsaveHelp"SAVE.t filename (save current model as file\n \'filename\' of type \'t\' extension)\n \nParameters: \n .v = valence coordinate VFILE ([.vfi])\n .c = cartesian coordinate CFILE (.cfi)\n .adf = ADF input file (.adf)\n .g = Gaussian input file (.gau)\n .gms = GAMESS input file (.gms)\n .jag = Jaguar input file (.jag)\n .mm = MM2 molecular mechanics file (.mm2)\n .mnd = AM1/MINDO-type input file (.mnd)\n .mp = Molpro input file (.mp)\n .nw = NWChem input file (.nw)\n .orc = Orca input file (.orc)\n .pqs = PQS input file (.pqs)\n .qc = Q-Chem input file (.qc)\nExample:\n SAVE.G job [save Gaussian-type \'job.gau\' file]\n"protected static final java.lang.StringsearchHelp" NBOSearch: COMMAND SYNTAX AND PROGRAM OVERVIEW\nPROGRAM OVERVIEW:\nFollow menu prompts through the decision tree to the keyword module and datum of interest. Each menu appears with \'Current [V-list] settings\' and a scrolling list of output values. All output lines are also echoed to an external NBOLOG$$.DAT file and error messages go to NBOERR$$.DAT for later reference.\n\nGENERAL \'M V n\' COMMAND SYNTAX:\nNBOSearch user responses generally consist of \'commands\' \n(replies to prompts)\nof the form \'M (V (n))\', where\n M (integer) = [M]enu selection from displayed items\n V (character) = [V]ariable data type to be selected\n [J](obname)\n [B](asis)\n [O](rbital number)\n [A](tom number, in context)\n [U](nit number)\n [d](onor NBO number)\n [a](cceptor NBO number, in context)\n n (integer) = [n]umber of the desired O/A/U/d/a selection\nResponses may also be of simple \'M\', \'V\', or \'Vn\' form , where\n \'M\' : selects a numbered menu choice (for current [V] choices)\n \'V\' : requests a menu of [V] choices\n \'Vn\': selects [V] number \'n\' (and current [S])\nNote that [V]-input is case-insensitive, so \'A\' (or \'a\') is interpreted as \'atom\' or \'acceptor\' according to context. Note also that \'Vn\' commands can be\ngiven in separated \'V n\' form. Although not explicitly included in each active [V]-select list, the \'H\'(elp) key is recognized at each prompt. For NRT search (only), variable [V] may also be \'R\' (for \'resonance structure\' and A\' (for \'interacting atom\'). Current A (atom) and A\' (interacting atom) values determine the current A-A\' \'bond\' selection small fractional bond order.)\n\nEXAMPLES:\n \'2 a7\' : requests menu item 2 for atom 7 (if A-select active)\n \'3 o2\' : requests menu item 3 for orbital 2 \n"protected static final java.lang.StringshowHelp"SHOW <formula> (create a molecule model from\n its \'formula\')\nSHOW <acceptor> <donor-1> <donor-2>...\n (create supramolecular model from\n radical \'acceptor\' and ligand\n \'donor-i\' formulas)\nThe chemical \'formula\' is a valid Lewis-typeline formula, similar to textbook examples.Use colons to denote multiple bonds (C::O doublebond, C:::N triple bond, etc.) and parenthesesto identify repeat units or side groups.Atomic symbols in the range H-Cf (Z = 1-98)and repetition numbers 1-9 are allowed.Chemical formula symbols are case-sensitive.\n \nLigated free radicals (with free-valent acceptorsites) can also be formed in specified hapticitymotifs with chosen molecular ligands. Radical<acceptor> and ligand <donor-i> monomers arespecified by valid line formulas, with eachligand <donor> formula preceded by a number ofcolons (:) representing the number of 2e sitesin the desired ligand denticity (such as \':NH3\'for monodentate ammine ligand, \'::NH2CH::CH2\'for bidentate vinylamine ligand, or \':::Bz\' fortridentate benzene ligand). Each such ligationsymbol may be prefixed with a stoichiometriccoefficient 2-9 for the number of ligands.\n \nIn both molecular and supramolecular formulas,valid transition metal duodectet structuresare also accepted. For d-block molecular species,the default idealized metal hybridization isomercan be altered with the REBOND command.For d-block species one can also includecoordinative ligands (:Lig), enclosed inparentheses and preceded by a colon symbol.Formal \'ylidic\' charges are allowed only foradjacent atom pairs (e.g., dative pi-bonds).\n \nModels may also be specified by using acronymsfrom a library of pre-formed species (manyat B3LYP/6-31+G* optimized level). Each suchacronym can also be used as a monovalent ligandin MUTATE commands, as illustrated below.\n \nCommon cyclic aromatic species\n Bz C6H6 benzene\n A10R2L C10H8 naphthalene\n A14R3L C14H12 anthracene\n A18R4L C18H16 tetracene\n A22R5L C22H20 pentacene\n A14R3 C14H10 phenanthrene\n A14R4 C14H12 chrysene\n A16R4 C16H10 pyrene\n A18R4 C18H12 triphenylene\n A20R5 C20H12 benzopyrene\n A20R6 C20H10 corannulene\n A24R7 C24H12 coronene\n A32R10 C32H14 ovalene\nCommon cyclic saturated species\n R6C C6H12 cyclohexane (chair)\n R6B \' \' (boat t.s.) \n R6T \' \' (twist-boat)\n R5 C5H10 cyclopentane\n R4 C4H8 cyclobutane\n R3 C3H6 cyclopropane\n RB222 [2,2,2]bicyclooctane\n RB221 [2,2,1]bicycloheptane (norbornane)\n RB211 [2,1,1]bicyclohexane\n RB111 [1,1,1]bicyclopentane (propellane)\n R5S spiropentane\n RAD adamantane\n \nCommon inorganic ligands\n acac acetylacetonate anion (bidentate)\n bipy 2,2\"\"-bipyridine (bidentate)\n cp cyclopentadienyl anion (:, ::, :::)\n dien diethylenetriamine (tridentate)\n dppe 1,2-bis(diphenylphosphino)ethane\n (bidentate)\n edta ethylenediaminetetraacetate anion\n (hexadentate)\n en ethylenediamine (bidentate)\n phen 1,10-phenanthroline (bidentate)\n tren tris(2-aminoethyl)amine (tetradentate)\n trien triethylenetetramine (tetradentate)\n \nPeptide fragments (HC::ONHCH2R)\n GLY glycine\n ALA alanine\n VAL valine\n LEU leucine\n ILE isoleucine\n PRO proline\n PHE phenylalanine\n TYR tyrosine\n TRP tryptophan\n SER serine\n THR threonine\n CYS cysteine\n MET methionine\n ASN asparagine\n GLN glutamine\n ASP aspartate\n GLU glutamate\n LYS lysine\n ARG argenine\n HIS histidine\n \nNucleic acid fragments\n NA_G guanine\n NA_C cytosine\n NA_A adenine\n NA_T thymine\n NA_U uracil\n NA_R ribose backbone fragment\n \nIn addition, the SHOW command recognizes\n\'D3H\' (trigonal bipyramid) or \'D4H\' (octahedral)\nspecies, created as SF5, SF6, respectively.\n \n(\'SHOW\' and \'FORM\' are synonymous commands.) \nMolecular examples:\n SHOW CH3C::OOH acetic acid\n SHOW CH3(CH2)4CH3 n-hexane\n SHOW WH2(:NH3)2 diammine of WH2\n SHOW NA_C cytosine\n SHOW CH4 methane\n MUTATE 3 RAD methyladamantane\n SHOW ALA alanine\n MUTATE 7 ALA ala-ala\n MUTATE 17 ALA ala-ala-ala, etc.\nSupramolecular examples:\n SHOW CH3 :H2O hydrated methyl radical\n SHOW Cr 2:::Bz dibenzene chromium\n SHOW CrCl3 2:H2O :NH3\n SHOW Cr 3::acac\n SHOW Cr ::::::edta\n"protected static final java.lang.StringswitchHelp"SWITCH IA IB [switch atoms IA, IB (and\n attached groups) to invert\n configuration at an attached\n stereocenter.]\nExample:\n SHOW ALA (L-alanine)\n SWITCH 6 7 (switch to D-alanine)\n"protected static final java.lang.StringsymHelp"SYMMETRY (determine point group)\n \nNote that exact point-group symmetry is amathematical idealization. NBOModel recognizes\'effective\' symmetry, adequate for chemicalpurposes even if actual atom positions deviateslightly (say, ~0.02A) from idealized symmetry."protected static final java.lang.StringtwistHelp"TWIST IA IB IC IC newval\n IA-IB-IC-ID angle to \'newval\')\n \nExample:\n SHOW C2H6 ethane (staggered)\n TWIST 1 2 3 4 0. ethane (eclipsed)\n"protected static final java.lang.StringunifyHelp"UNIFY CFI-1 CFI-2 IA1 IB1 IA2 IB2 dist\n (form a complex from molecules in\n cfiles CFI-1, CFI-2, chosen to have\n linear IA1-IB1-IB2-IA2 alignment\n and IA1-IA2 separation \'dist\')\n \nCFI-1 and CFI-2 are two CFILES (previously\ncreated with SAVE.C); IA1, IB1 are two atoms\nof CFI-1 and IA2, IB2 are two atoms of CFI-2\nthat will be \'unified\' in linear IA1-IB1-IB2-IA2\narrangement, with specified IA1-IA2 \'dist\'.\n \nExample:\n SHOW H2C::O (create formaldehyde)\n SAVE.C H2CO (save H2CO.cfi)\n SHOW NH3 (create ammonia)\n SAVE.C NH3 (save NH3.cfi)\n UNIFY H2CO.cfi NH3.cfi 2 3 1 2 4.3\n (creates H-bonded complex)\n"protected static final java.lang.StringuseHelp"USE.t filename (use file \'filename\' of type \'t\'\n to initiate a modeling session)\n \n\'t\' parameters: \n .v = valence coordinate VFILE ([.vfi])\n .c = cartesian coordinate CFILE (.cfi)\n .a = NBO archive file (.47)\n .adf = ADF input file (.adf)\n .g = Gaussian input file (.gau)\n .gms = GAMESS input file (.gms)\n .jag = Jaguar input file (.jag)\n .l = Gaussian log file (.log)\n .mp = Molpro input file (.mp)\n .nw = NWChem input file (.nw)\n .orc = Orca input file (.orc)\n .pqs = PQS input file (.pqs)\n .qc = Q-Chem input file (.qc)\nExample:\n USE.G ACETIC (use Gaussian-type ACETIC.GAU\n input file to start session)\n" -
org.openscience.jmol.app.nbo.org.openscience.jmol.app.nbo.NBODialogModel Modifier and Type Constant Field Value private static final intALTER4private static final intCLIP2protected static final intCONFIRM_SAVE0protected static final intCONFIRM_VIEWOUTPUT1private static final java.lang.StringINPUT_FILE_EXTENSIONS";adf;cfi;gau;gms;jag;mm2;mnd;mp;nw;orc;pqs;qc;vfi;g09;com"private static final java.lang.StringLOAD_SCRIPT";set zoomlarge false;zoomTo 0.5 {*} 0;"private static final intMUTATE1protected static final intVALUE5 -
org.openscience.jmol.app.nbo.org.openscience.jmol.app.nbo.NBODialogRun Modifier and Type Constant Field Value private static final java.lang.StringCHOOSE_DESCRIPTION"$CHOOSE Keylist - Edit lone pairs and bond orders" -
org.openscience.jmol.app.nbo.org.openscience.jmol.app.nbo.NBODialogSearch Modifier and Type Constant Field Value private static final intBEND_VIS8private static final intCMO_VIS9private static final intE2_VIS7private static final intKEYWD_BAS1BAS211private static final intKEYWD_BEND3private static final intKEYWD_CMO8private static final intKEYWD_DIPOLE9private static final intKEYWD_E2PERT4private static final intKEYWD_NBO2private static final intKEYWD_NLMO5private static final intKEYWD_NPA1private static final intKEYWD_NRT6private static final intKEYWD_OPBAS10private static final intKEYWD_STERIC7private static final intMO_VIS8private static final intNBO_VIS7private static final intNLMO_VIS7private static final intNPA_VIS11private static final intSTERIC_VIS8 -
org.openscience.jmol.app.nbo.org.openscience.jmol.app.nbo.NBODialogView Modifier and Type Constant Field Value protected static final intVIEW_STATE_CAMERA3protected static final intVIEW_STATE_MAIN0protected static final intVIEW_STATE_PLANE1protected static final intVIEW_STATE_VECTOR2 -
org.openscience.jmol.app.nbo.org.openscience.jmol.app.nbo.NBOJobQueueManager Modifier and Type Constant Field Value private static final intQUEUE_MAX10 -
org.openscience.jmol.app.nbo.NBOService Modifier and Type Constant Field Value private static final intMODE_ERR-1static final intMODE_ERROR-1static final intMODE_IMAGE88static final intMODE_MODEL1static final intMODE_RAW0static final intMODE_RUN20static final intMODE_SEARCH40static final intMODE_SEARCH_LIST46static final intMODE_SEARCH_SELECT47static final intMODE_SEARCH_VALUE45static final intMODE_VIEW30static final intMODE_VIEW_LIST33
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org.openscience.jmol.app.surfacetool.SurfaceTool Modifier and Type Constant Field Value static final intCIRCLE_FRACTION3static final intDEGREES0static final intGRADIANS2static final intRADIANS1static final intUNITS_PI4
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org.openscience.jmol.app.webexport.Test Modifier and Type Constant Field Value private static final longserialVersionUID1L -
org.openscience.jmol.app.webexport.WebExport Modifier and Type Constant Field Value static final java.lang.StringchemappsPath"http://chemapps.stolaf.edu/jmol/jsmol"private static final intIN_JMOL1private static final intSTAND_ALONE0