Package org.jmol.adapter.readers.pymol

Class PyMOL

  • class PyMOL
extends java.lang.Object
    PyMOL settings and constants. see http://sourceforge.net/projects/pymol/files/pymol/ Settings: http://sourceforge.net/p/pymol/code/4025/tree/trunk/pymol/layer1/Setting.h Colors: http://sourceforge.net/p/pymol/code/4008/tree/trunk/pymol/layer1/Color.c Colors there are created on the fly. The colors here were derived from Color.pm (Roni Gordon, via Jaime Prilusky, Jan 2013) with note therein: for i in cmd.get_color_indices(1): print>>fp, ( ( i[1], i[0], ( int( cmd.get_color_tuple(i[0])[0]*255 ), int( cmd.get_color_tuple(i[0])[1]*255 ), int(cmd.get_color_tuple(i[0])[2]*255 ) ) ) ); which I then turned into the list below using Excel. I assume there are also custom colors that need to be considered; we are not doing that here yet. -- Bob Hanson, Feb 2013