Field Detail

• iHaveModelStatement

  private boolean iHaveModelStatement

• isCompoundDocument

  private boolean isCompoundDocument

• inputOnly

  private boolean inputOnly

• espCharges

  private boolean espCharges

• isInputFirst

  private boolean isInputFirst

• iHaveNewDir

  private boolean iHaveNewDir

• endCheck

  private java.lang.String endCheck

• title

  private java.lang.String title

• spartanArchive

  SpartanArchive spartanArchive

• titles

  java.util.Map<java.lang.String,​java.lang.String> titles

• haveCharges

  private boolean haveCharges

Constructor Detail

• SpartanSmolReader

  public SpartanSmolReader()

Method Detail

• initializeReader

  protected void initializeReader()
                           throws java.lang.Exception

  Overrides:

  initializeReader in class AtomSetCollectionReader

  Throws:

  java.lang.Exception

• checkLine

  protected boolean checkLine()
                       throws java.lang.Exception

  Overrides:

  checkLine in class AtomSetCollectionReader

  Returns:

  true if need to read new line

  Throws:

  java.lang.Exception

• makeNewAtomSet

  private void makeNewAtomSet()

• finalizeSubclassReader

  protected void finalizeSubclassReader()
                                 throws java.lang.Exception

  Description copied from class: AtomSetCollectionReader
  optional reader-specific method run first.

  Overrides:

  finalizeSubclassReader in class AtomSetCollectionReader

  Throws:

  java.lang.Exception

• readMyTransform

  private void readMyTransform()
                        throws java.lang.Exception

  Throws:

  java.lang.Exception

• readOutput

  private void readOutput()
                   throws java.lang.Exception

  Throws:

  java.lang.Exception

• readArchive

  private java.lang.String readArchive()
                                throws java.lang.Exception

  Throws:

  java.lang.Exception

• setCharges

  private void setCharges()

• readProperties

  private void readProperties()
                       throws java.lang.Exception

  Throws:

  java.lang.Exception

• readArchiveHeader

  private java.lang.String readArchiveHeader()
                                      throws java.lang.Exception

  Throws:

  java.lang.Exception

• setEnergy

  public void setEnergy​(float value)