Package org.jmol.dssx

Class Bridge

  • class Bridge
extends java.lang.Object
    A class for cataloging ladder bridges in a DSSP calculation
    Author:
    hansonr

    • Field Summary

      Fields 
      Modifier and Type Field Description
      (package private) Atom a  
      (package private) Atom b  
      (package private) boolean isAntiparallel  
      (package private) int[][] ladder  

    • Constructor Summary

      Constructors 
      Constructor Description
      Bridge​(Atom a, Atom b, java.util.Map<int[][],​java.lang.Boolean> htLadders)  

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      (package private) boolean addBridge​(Bridge bridge, java.util.Map<int[][],​java.lang.Boolean> htLadders)  
      private void addLadder​(java.util.Map<int[][],​java.lang.Boolean> htLadders)  
      private boolean canAdd​(Bridge bridge)  
      private void extendLadder​(int index1, int index2)  
      java.lang.String toString()  

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

    • Field Detail

      • ladder

        int[][] ladder

      • isAntiparallel

        boolean isAntiparallel

    • Constructor Detail

      • Bridge

        Bridge​(Atom a,
       Atom b,
       java.util.Map<int[][],​java.lang.Boolean> htLadders)

    • Method Detail

      • addBridge

        boolean addBridge​(Bridge bridge,
                  java.util.Map<int[][],​java.lang.Boolean> htLadders)

      • addLadder

        private void addLadder​(java.util.Map<int[][],​java.lang.Boolean> htLadders)

      • canAdd

        private boolean canAdd​(Bridge bridge)

      • extendLadder

        private void extendLadder​(int index1,
                          int index2)

      • toString

        public java.lang.String toString()
        Overrides:
        toString in class java.lang.Object