java.lang.Object
- org.jmol.shape.Shape
- - org.jmol.shape.AtomShape
  - - org.jmol.shape.Measures

All Implemented Interfaces:: JmolMeasurementClient

public class Measures
extends AtomShape
implements JmolMeasurementClient

Field Summary

Fields
Modifier and Type	Field	Description
`private BS`	`bsSelected`
`short`	`colix`
`TickInfo`	`defaultTickInfo`
`javajs.awt.Font`	`font3d`
`private java.util.Map<java.lang.String,java.lang.Integer>`	`htMin`
`private java.lang.Boolean`	`intramolecular`
`private boolean`	`measureAllModels`
`int`	`measurementCount`
`javajs.util.Lst<Measurement>`	`measurements`
`MeasurementPending`	`mPending`
`private boolean`	`mustBeConnected`
`private boolean`	`mustNotBeConnected`
`private RadiusData`	`radiusData`
`private java.lang.String`	`strFormat`
`(package private) TickInfo`	`tickInfo`
`private int`	`tokAction`

Fields inherited from class org.jmol.shape.AtomShape
ac, atoms, bsSizeDefault, colixes, isActive, mad, mads, monomerCount, paletteIDs

Fields inherited from class org.jmol.shape.Shape
bsColixSet, bsSizeSet, isBioShape, ms, myType, RADIUS_MAX, shapeID, translucentAllowed, translucentLevel, vf, vwr

Constructor Summary

Constructors
Constructor Description

Measures()

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`clear()`
`private void`	`define(MeasurementData md, int tokAction)`
`private void`	`defineAll(int iPt, Measurement m, boolean isDelete, boolean isShow, boolean doSelect)`
`private void`	`defineMeasurement(int i, Measurement m, boolean doSelect)`
`private void`	`deleteI(int i)`
`private void`	`deleteM(Measurement m)`
`private void`	`deleteO(java.lang.Object value)`
`private void`	`doAction(MeasurementData md, java.lang.String s, int tok)`
`private int`	`find(Measurement m)`
`private javajs.util.Lst<java.util.Map<java.lang.String,java.lang.Object>>`	`getAllInfo()`
`private java.lang.String`	`getAllInfoAsString()`
`private java.util.Map<java.lang.String,java.lang.Object>`	`getInfo(int index)`
`java.lang.String`	`getInfoAsString(int index)`
`private static java.lang.String`	`getMessage(Measurement m, boolean asBitSet)`
`java.lang.Object`	`getProperty(java.lang.String property, int index)`
`protected void`	`initModelSet()`
`void`	`initShape()`
`void`	`processNextMeasure(Measurement m)`
`private void`	`reformatDistances()`
`private void`	`setColor(short colix)`
`private void`	`setFormats(java.lang.String format)`
`private void`	`setIndices()`
`void`	`setProperty(java.lang.String propertyName, java.lang.Object value, BS bsIgnored)`
`private Measurement`	`setSingleItem(javajs.util.Lst<java.lang.Object> vector)`
`protected void`	`setSize(int size, BS bsSelected)`
`void`	`setVisibilityInfo()`
`private void`	`showHide(boolean isHide)`
`private void`	`showHideM(Measurement m, boolean isHide)`
`private void`	`toggle(Measurement m)`
`private void`	`toggleOn(int[] indices)`

Methods inherited from class org.jmol.shape.AtomShape
checkColixLength, getShapeState, getSize, setAtomClickability, setColixAndPalette, setPropAS, setSize2, setSizeRD, setSizeRD2

Methods inherited from class org.jmol.shape.Shape
appendCmd, checkBoundsMinMax, checkObjectClicked, checkObjectDragged, checkObjectHovered, coordinateInRange, encodeColor, findNearestAtomIndex, getColix, getColixA, getColixB, getColixI, getColorCommand, getColorCommandUnk, getFontCommand, getIndexFromName, getPropertyData, getPropShape, getShapeDetail, getSizeG, getTranslucentLabel, initializeShape, replaceGroup, setModelSet, setModelVisibilityFlags, setPropS, setShapeSizeRD, wasClicked

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

bsSelected
```
private BS bsSelected
```

strFormat
```
private java.lang.String strFormat
```

mustBeConnected
```
private boolean mustBeConnected
```

mustNotBeConnected
```
private boolean mustNotBeConnected
```

radiusData
```
private RadiusData radiusData
```

intramolecular

private java.lang.Boolean intramolecular

measureAllModels
```
private boolean measureAllModels
```

measurementCount
```
public int measurementCount
```

measurements

public final javajs.util.Lst<Measurement> measurements

mPending
```
public MeasurementPending mPending
```

colix
```
public short colix
```

tickInfo
```
TickInfo tickInfo
```

defaultTickInfo
```
public TickInfo defaultTickInfo
```

font3d
```
public javajs.awt.Font font3d
```

htMin

private java.util.Map<java.lang.String,java.lang.Integer> htMin

tokAction
```
private int tokAction
```

Constructor Detail
- Measures
```
public Measures()
```

Method Detail

initModelSet
```
protected void initModelSet()
```
Overrides:

initModelSet in class AtomShape

initShape
```
public void initShape()
```
Overrides:

initShape in class AtomShape

setSize

protected void setSize(int size,
                       BS bsSelected)

Overrides:: setSize in class AtomShape

setProperty

public void setProperty(java.lang.String propertyName,
                        java.lang.Object value,
                        BS bsIgnored)

Specified by:: setProperty in class Shape

setSingleItem

private Measurement setSingleItem(javajs.util.Lst<java.lang.Object> vector)

getProperty

public java.lang.Object getProperty(java.lang.String property,
                                    int index)

Overrides:: getProperty in class Shape
Returns:: true if serviced

clear
```
public void clear()
```

setColor

private void setColor(short colix)

setFormats

private void setFormats(java.lang.String format)

showHide

private void showHide(boolean isHide)

showHideM

private void showHideM(Measurement m,
                       boolean isHide)

toggle

private void toggle(Measurement m)

toggleOn

private void toggleOn(int[] indices)

deleteM

private void deleteM(Measurement m)

deleteO

private void deleteO(java.lang.Object value)

defineAll

private void defineAll(int iPt,
                       Measurement m,
                       boolean isDelete,
                       boolean isShow,
                       boolean doSelect)

find
```
private int find(Measurement m)
```

setIndices
```
private void setIndices()
```

define

private void define(MeasurementData md,
                    int tokAction)

processNextMeasure
```
public void processNextMeasure(Measurement m)
```
Specified by:

processNextMeasure in interface JmolMeasurementClient

defineMeasurement

private void defineMeasurement(int i,
                               Measurement m,
                               boolean doSelect)

getMessage

private static java.lang.String getMessage(Measurement m,
                                           boolean asBitSet)

deleteI
```
private void deleteI(int i)
```

doAction

private void doAction(MeasurementData md,
                      java.lang.String s,
                      int tok)

reformatDistances
```
private void reformatDistances()
```

getAllInfo

private javajs.util.Lst<java.util.Map<java.lang.String,java.lang.Object>> getAllInfo()

getAllInfoAsString

private java.lang.String getAllInfoAsString()

getInfo

private java.util.Map<java.lang.String,java.lang.Object> getInfo(int index)

getInfoAsString
```
public java.lang.String getInfoAsString(int index)
```
Overrides:

getInfoAsString in class AtomShape

Returns:

script, but only for Measures

setVisibilityInfo
```
public void setVisibilityInfo()
```

Class Measures

Field Summary

Fields inherited from class org.jmol.shape.AtomShape

Fields inherited from class org.jmol.shape.Shape

Constructor Summary

Method Summary

Methods inherited from class org.jmol.shape.AtomShape

Methods inherited from class org.jmol.shape.Shape

Methods inherited from class java.lang.Object

Field Detail

bsSelected

strFormat

mustBeConnected

mustNotBeConnected

radiusData

intramolecular

measureAllModels

measurementCount

measurements

mPending

colix

tickInfo

defaultTickInfo

font3d

htMin

tokAction

Constructor Detail

Measures

Method Detail

initModelSet

initShape

setSize

setProperty

setSingleItem

getProperty

clear

setColor

setFormats

showHide

showHideM

toggle

toggleOn

deleteM

deleteO

defineAll

find

setIndices

define

processNextMeasure

defineMeasurement

getMessage

deleteI

doAction

reformatDistances

getAllInfo

getAllInfoAsString

getInfo

getInfoAsString

setVisibilityInfo