Field Detail

• PREVIOUS_MESH_ID

  public static final java.lang.String PREVIOUS_MESH_ID

  See Also:

  Constant Field Values

• title

  public java.lang.String[] title

• meshColix

  public short meshColix

• normixes

  public short[] normixes

• lineData

  public javajs.util.Lst<javajs.util.P3[]> lineData

• thisID

  public java.lang.String thisID

• isValid

  public boolean isValid

• scriptCommand

  public java.lang.String scriptCommand

• colorCommand

  public java.lang.String colorCommand

• lattice

  public javajs.util.P3 lattice

• symops

  public javajs.util.M4[] symops

• symopNormixes

  public short[][] symopNormixes

• visible

  public boolean visible

• lighting

  public int lighting

• colorType

  public int colorType

• haveXyPoints

  public boolean haveXyPoints

• diameter

  public int diameter

• width

  public float width

• ptCenter

  public javajs.util.P3 ptCenter

• linkedMesh

  public Mesh linkedMesh

• vertexColorMap

  public java.util.Map<java.lang.String,​BS> vertexColorMap

• vAB

  public javajs.util.V3 vAB

• vTemp

  public javajs.util.V3 vTemp

• color

  public int color

• useColix

  public boolean useColix

• unitCell

  public SymmetryInterface unitCell

• scale3d

  public float scale3d

• index

  public int index

• atomIndex

  public int atomIndex

• modelIndex

  public int modelIndex

• visibilityFlags

  public int visibilityFlags

• insideOut

  public boolean insideOut

• checkByteCount

  public int checkByteCount

• normalsInverted

  private boolean normalsInverted

• showContourLines

  public boolean showContourLines

• showPoints

  public boolean showPoints

• drawTriangles

  public boolean drawTriangles

• fillTriangles

  public boolean fillTriangles

• showTriangles

  public boolean showTriangles

• frontOnly

  public boolean frontOnly

• isShell

  public boolean isShell

• isTwoSided

  public boolean isTwoSided

• havePlanarContours

  public boolean havePlanarContours

• bsTemp

  protected BS bsTemp

• colorDensity

  public boolean colorDensity

• cappingObject

  public java.lang.Object cappingObject

• slabbingObject

  public java.lang.Object slabbingObject

• volumeRenderPointSize

  public float volumeRenderPointSize

• connectedAtoms

  public int[] connectedAtoms

• isModelConnected

  public boolean isModelConnected

• recalcAltVertices

  public boolean recalcAltVertices

• symopColixes

  public short[] symopColixes

Constructor Detail

• Mesh

  public Mesh()

  always use Mesh().mesh1(thisID, colix, index)

Method Detail

• setVisibilityFlags

  public void setVisibilityFlags​(int n)

• mesh1

  public Mesh mesh1​(Viewer vwr,
                    java.lang.String thisID,
                    short colix,
                    int index)

• clear

  public void clear​(java.lang.String meshType)

• clearMesh

  public void clearMesh​(java.lang.String meshType)

• initialize

  public void initialize​(int lighting,
                         javajs.util.T3[] vertices,
                         javajs.util.P4 plane)

• setNormixes

  public short[] setNormixes​(javajs.util.V3[] normals)

• getNormals

  public javajs.util.V3[] getNormals​(javajs.util.T3[] vertices,
                                     javajs.util.P4 plane)

• setLighting

  public void setLighting​(int lighting)

• flipLighting

  private void flipLighting​(int lighting)

• invertNormixes

  private void invertNormixes()

• setTranslucent

  public void setTranslucent​(boolean isTranslucent,
                             float iLevel)

• sumVertexNormals

  protected void sumVertexNormals​(javajs.util.T3[] vertices,
                                  javajs.util.V3[] normals)

• sumVertexNormals2

  protected static void sumVertexNormals2​(Mesh m,
                                          javajs.util.T3[] vertices,
                                          javajs.util.V3[] normals)

• getMinDistance2ForVertexGrouping

  protected float getMinDistance2ForVertexGrouping()

• getState

  public java.lang.String getState​(java.lang.String type)

• getRendering

  protected java.lang.String getRendering()

• getOffsetVertices

  public javajs.util.P3[] getOffsetVertices​(javajs.util.P4 thePlane)

• setShowWithin

  public void setShowWithin​(javajs.util.Lst<javajs.util.P3> showWithinPoints,
                            float showWithinDistance2,
                            boolean isWithinNot)

  Parameters:

  showWithinPoints -

  showWithinDistance2 -

  isWithinNot -

• checkWithin

  public static boolean checkWithin​(javajs.util.T3 pti,
                                    javajs.util.Lst<javajs.util.P3> withinPoints,
                                    float withinDistance2,
                                    boolean isWithinNot)

• getVertexIndexFromNumber

  public int getVertexIndexFromNumber​(int vertexIndex)

• getVisibleVertexBitSet

  public BS getVisibleVertexBitSet()

• getVisibleVBS

  protected BS getVisibleVBS()

• setTokenProperty

  public void setTokenProperty​(int tokProp,
                               boolean bProp)

• getInfo

  java.lang.Object getInfo​(boolean isAll)

• getBoundingBox

  public javajs.util.P3[] getBoundingBox()

• getUnitCell

  public SymmetryInterface getUnitCell()

  Returns:

  unitcell

• rotateTranslate

  public void rotateTranslate​(javajs.util.Quat q,
                              javajs.util.T3 offset,
                              boolean isAbsolute)

• getNormalsTemp

  public javajs.util.V3[] getNormalsTemp()